| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002N17 | Sequence | 294 | 000557 (3) | ref|XP_009770454.1| | 7e-07 | PREDICTED: probable methyltransferase PMT7 [Nicotiana sylvestris] ref|XP_0097704 | 735 | 010019 (3) | ref|XP_009770454.1| | 3e-93 | PREDICTED: probable methyltransferase PMT7 [Nicotiana sylvestris] ref|XP_0097704 |
| JMSF030B13 | Sequence | 656 | 000557 (3) | ref|XP_009613892.1| | 1e-70 | PREDICTED: probable methyltransferase PMT7 [Nicotiana tomentosiformis] | 746 | 010019 (3) | ref|XP_009770454.1| | 4e-103 | PREDICTED: probable methyltransferase PMT7 [Nicotiana sylvestris] ref|XP_0097704 |
| JMSF033C20 | Sequence | 689 | 000557 (3) | ref|XP_009613892.1| | 2e-77 | PREDICTED: probable methyltransferase PMT7 [Nicotiana tomentosiformis] | 746 | 010019 (3) | ref|XP_009770454.1| | 4e-103 | PREDICTED: probable methyltransferase PMT7 [Nicotiana sylvestris] ref|XP_0097704 |
This contig is upended
. : . : . : . : . : . :
rJMSF030B13+ CACAGCGCCTTTCAGAGTATT
rJMSF002N17+ CACAGCGCCTTTCAGAGTATT
rJMSF033C20+ TCGGCCACAGCGCCTTTCAGAGTATT
____________________________________________________________
consensus TCGGCCACAGCGCCTTTCAGAGTATT
. : . : . : . : . : . :
rJMSF030B13+ CACAAAGTCTTGTGCGAATAGGTGTTGATCGTGAGAAATTCTTGTCAGACACAATCTATT
rJMSF002N17+ CACAAAGTCTTGTGCGAATAGGTGTTGATCGTGAGAAATTCTTGTCAGACACAATCTATT
rJMSF033C20+ CACAAAGTCTTGTGCGAATAGGTGTTGATCGTGAGAAATTCTTGTCAGACACAATCTATT
____________________________________________________________
consensus CACAAAGTCTTGTGCGAATAGGTGTTGATCGTGAGAAATTCTTGTCAGACACAATCTATT
. : . : . : . : . : . :
rJMSF030B13+ GGCAAGACCAAGTTCGCCATTATTGGAGGTTGATGGGTGTTGAAGAGAATCAAATACGTA
rJMSF002N17+ GGCAAGACCAAGTTCGCCATTATTGGAGGTTGATGGGTGTTGAAGAGAATCAAATACGTA
rJMSF033C20+ GGCAAGACCAAGTTCGCCATTATTGGAGGTTGATGGGTGTTGAAGAGAATCAAATACGTA
____________________________________________________________
consensus GGCAAGACCAAGTTCGCCATTATTGGAGGTTGATGGGTGTTGAAGAGAATCAAATACGTA
. : . : . : . : . : . :
rJMSF030B13+ ATGTCATGGACATGAATGCTTTCCTCGGTGGATTTGCAGTTGCTTTGAACACATGGCCAA
rJMSF002N17+ ATGTCATGGACATGAATGCTTTCCTCGGTGGATTTGCAGTTGCTTTGAACACATGGCCAA
rJMSF033C20+ ATGTCATGGACATGAATGCTTTCCTCGGTGGATTTGCAGTTGCTTTGAACACATGGCCAA
____________________________________________________________
consensus ATGTCATGGACATGAATGCTTTCCTCGGTGGATTTGCAGTTGCTTTGAACACATGGCCAA
. : . : . : . : . : . :
rJMSF030B13+ TCTGGGTAATGAATGTAGTTCCTGTAACCATGAACAATACCCTGTCTGCCATTTATGACC
rJMSF002N17+ TCTGGGTAATGAATGTAGTTCCTGTAACCATGAACAATACCCTGTCTGCCATTTATGACC
rJMSF033C20+ TCTGGGTAATGAATGTAGTTCCTGTAACCATGAACAATACCCTGTCTGCCATTTATGACC
____________________________________________________________
consensus TCTGGGTAATGAATGTAGTTCCTGTAACCATGAACAATACCCTGTCTGCCATTTATGACC
. : . : . : . : . : . :
rJMSF030B13+ GTGGTCTAGTAGGCACTTTTCATGACTGGTGTGAGCCATTTTCAACATATCCACGCTCAT
rJMSF002N17+ GTGGTCTAGTAGGCACTTTTCATGACTGGTGTGAGCCATTTTCAACATATCCACGCTCAT
rJMSF033C20+ GTGGTCTAGTAGGCACTTTTCATGACTGGTGTGAGCCATTTTCAACATATCCACGCTCAT
____________________________________________________________
consensus GTGGTCTAGTAGGCACTTTTCATGACTGGTGTGAGCCATTTTCAACATATCCACGCTCAT
. : . : . : . : . : . :
rJMSF030B13+ ACGATCTGTTGCATGCCAACCATATTTTTTCTCACTATAGAAATTACGGACAAGGTTGTT
rJMSF002N17+ ACGATCTGTTGCATGCCAACCATATTTTTTCTCACTATAGAAATTACGGACAAGGTTGTT
rJMSF033C20+ ACGATCTGTTGCATGCCAACCATATTTTTTCTCACTATAGAAATTACGGACAAGGTTGTT
____________________________________________________________
consensus ACGATCTGTTGCATGCCAACCATATTTTTTCTCACTATAGAAATTACGGACAAGGTTGTT
. : . : . : . : . : . :
rJMSF030B13+ TGCTTGAAGATATCATGCTGGAGATGGATCGTATGCTAAGACCTCAGGGATTTATTATTA
rJMSF002N17+ TGCTTGAAGATATCATGCTGGAGATGGATCGTATGCTAAGACCTCAGGGATTTATTATTA
rJMSF033C20+ TGCTTGAAGATATCATGCTGGAGATGGATCGTATGCTAAGACCTCAGGGATTTATTATTA
____________________________________________________________
consensus TGCTTGAAGATATCATGCTGGAGATGGATCGTATGCTAAGACCTCAGGGATTTATTATTA
. : . : . : . : . : . :
rJMSF030B13+ TCCGAGATGAAGAAGCTGTTGTATCTAGGATAAAAGATCTAGCTCCAAAGTTCCTTTGGG
rJMSF002N17+ TCCGAGATGAAGAAGCTGTTGTATCTAGGATAAAAGATCTAGCTCCAAAGTTCCTTTGGG
rJMSF033C20+ TCCGAGATGAAGAAGCTGTTGTATCTAGGATAAAAGATCTAGCTCCAAAGTTCCTTTGGG
____________________________________________________________
consensus TCCGAGATGAAGAAGCTGTTGTATCTAGGATAAAAGATCTAGCTCCAAAGTTCCTTTGGG
. : . : . : . : . : . :
rJMSF030B13+ ACGCCAAATTGCATTTTCTTGAAGACGATAGAAGGAAAATGGAACAGGTTCTGCTTTGCA
rJMSF002N17+ ACGCCAAATTGCATTTTCTTGAAGACGATAG-ATGAAAATGGAACAGGTTCTGCTTTGCA
rJMSF033C20+ ACGCCAAATTGCATTTTCTTGAAGACGATAGAAGGAAAATGGAACAGGTTCTGCTTTGCA
____________________________________________________________
consensus ACGCCAAATTGCATTTTCTTGAAGACGATAGAAGGAAAATGGAACAGGTTCTGCTTTGCA
. : . : . : . : . : . :
rJMSF030B13+ GAAAAAAGTTCTGGGCAATCACCTAATGCAAAAATGGCTCGACTATCAACTAGTTTTTCG
rJMSF002N17+ GAAAAAAGTTCTGGGCAATCACCTAATGCAAAAATGGCTCGACTATCAACTAGTTTTTCG
rJMSF033C20+ GAAAAAAGTTCTGGGCAATCACCTAATGCAAAAATGGCTCGACTATCAACTAGTTTTTCG
____________________________________________________________
consensus GAAAAAAGTTCTGGGCAATCACCTAATGCAAAAATGGCTCGACTATCAACTAGTTTTTCG
. : . : . : . : . : . :
rJMSF030B13+ CTTCTGAGAATGTCACATTCTGTATTTCTCTTACAGGTGCTAGTTTTGATTCATGTTGTG
rJMSF002N17+ CTTCTGAGAATGTCACATTCTGTATTTCTCTTACAGGTGCTAGTTTTGATTCATGTTGTG
rJMSF033C20+ CTTCTGAGAATGTCACATTCTGTATTTCTCTTACAGGTGCTAGTTTTGATTCATGTTGTG
____________________________________________________________
consensus CTTCTGAGAATGTCACATTCTGTATTTCTCTTACAGGTGCTAGTTTTGATTCATGTTGTG
. : . : . : . : . : . :
rJMSF030B13+ TTCTTAGTTTTTCATTCCTTGGTTGTC
rJMSF002N17+ TTCTTAGTTTTTCATTCCTTGGTTGTC
rJMSF033C20+ TTCTTAGTTTTTCATTCCTTGGTTGTCAGTTGTAAATGATATAAAGACACAAATCTGTTT
____________________________________________________________
consensus TTCTTAGTTTTTCATTCCTTGGTTGTCAGTTGTAAATGATATAAAGACACAAATCTGTTT