| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF006H02 | Sequence | 407 | 013235 (4) | ref|XP_011082723.1| | 6e-22 | PREDICTED: E3 ubiquitin-protein ligase MBR1 [Sesamum indicum] ref|XP_011082724.1 | 378 | 010017 (3) | emb|CDP05971.1| | 1e-11 | unnamed protein product [Coffea canephora] |
| JMSF010K16 | Sequence | 339 | 013235 (4) | ref|XP_011082723.1| | 8e-18 | PREDICTED: E3 ubiquitin-protein ligase MBR1 [Sesamum indicum] ref|XP_011082724.1 | 755 | 010017 (3) | emb|CDP05971.1| | 5e-67 | unnamed protein product [Coffea canephora] |
| JMSF032O13 | Sequence | 671 | 013235 (4) | ref|XP_009596539.1| | 198 | PREDICTED: uncharacterized protein LOC104092609 [Nicotiana tomentosiformis] ref| | 733 | 010017 (3) | emb|CDP05971.1| | 8e-64 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF010K16+ ATACAAATATTGCGAGAAATCGTAACATTCCTAACATGAGAG
____________________________________________________________
consensus ATACAAATATTGCGAGAAATCGTAACATTCCTAACATGAGAG
. : . : . : . : . : . :
rJMSF010K16+ TTCTGCCAGAAGATGGAGTGGCGATTTTAGAGATTCCTGAGTACAATGAAGTAGGGGATT
rJMSF032O13+ TAGGGGATT
____________________________________________________________
consensus TTCTGCCAGAAGATGGAGTGGCGATTTTAGAGATTCCTGAGTACAATGAAGTAGGGGATT
. : . : . : . : . : . :
rJMSF010K16+ CTATTGATCAGCACAGAGATATGCGATTGGACATAGATCACATGTCTTATGAGGAGCTTC
rJMSF032O13+ CTATTGATCAGCACAGAGATATGCGATTGGACATAGATCACATGTCTTATGAGGAGCTTC
____________________________________________________________
consensus CTATTGATCAGCACAGAGATATGCGATTGGACATAGATCACATGTCTTATGAGGAGCTTC
. : . : . : . : . : . :
rJMSF010K16+ TTGCATTGGGAGAGCAGATTGGGTGTGTAACTACTGGGTTGTCAGAGGAAGTCATTATAA
rJMSF032O13+ TTGCATTGGGAGAGCAGATTGGGTGTGTAACTACTGGGTTGTCAGAGGAAGTCATTATAA
____________________________________________________________
consensus TTGCATTGGGAGAGCAGATTGGGTGTGTAACTACTGGGTTGTCAGAGGAAGTCATTATAA
. : . : . : . : . : . :
rJMSF010K16+ GCCTTTTGAAAACAAGATCATTCACTTCCTCTAATCCCTACAGTACAGAATGTTTGGACC
rJMSF032O13+ GCCTTTTGAAAACAAGATCATTCACTTCCTCTAATCCCTACAGTACAGAATGTTTGGACC
____________________________________________________________
consensus GCCTTTTGAAAACAAGATCATTCACTTCCTCTAATCCCTACAGTACAGAATGTTTGGACC
. : . : . : . : . : . :
rJMSF010K16+ AAGAAACTGATTTTTGTGTGATATGCCAGAACGATTACAAAGACCAAGAAAAGATTGGAA
rJMSF032O13+ AAGAAACTGATTTTTGTGTGATATGCCAGAACGATTACAAAGACCAAGAAAAGATTGGAA
____________________________________________________________
consensus AAGAAACTGATTTTTGTGTGATATGCCAGAACGATTACAAAGACCAAGAAAAGATTGGAA
. : . : . : . : . : . :
rJMSF006H02+ GGGCATGAATATCATGTAGATTGCATAAAGAAGTGGTTGGTTGTGAAGA
rJMSF010K16+ TTGTTTCATGCGGGCATGAATATCATGTAGATTGCATAAAGAAGTGGTTGGTTGTGAAGA
rJMSF032O13+ TTGTTTCATGCGGGCATGAATATCATGTAGATTGCATAAAGAAGTGGTTGGTTGTGAAGA
____________________________________________________________
consensus TTGTTTCATGCGGGCATGAATATCATGTAGATTGCATAAAGAAGTGGTTGGTTGTGAAGA
. : . : . : . : . : . :
rJMSF006H02+ ACAGTTGTCCAATATGCAAATCCACAGCTGTGACGCCAGGAAAAACGGAGTTGTGAGTTG
rJMSF010K16+ ACAGTTGTCCAATATGCAAATCCACAGCTGTGACGCCAGGAAAAACGGAGTTGTGAGTTG
rJMSF032O13+ ACAGTTGTCCAATATGCAAATCCACAGCTGTGACGCCAGGAAAAACGGAGTTGTGAGTTG
____________________________________________________________
consensus ACAGTTGTCCAATATGCAAATCCACAGCTGTGACGCCAGGAAAAACGGAGTTGTGAGTTG
. : . : . : . : . : . :
rJMSF006H02+ AGGTTGTTGATCGGCGCCTCTGTAAGAAACATATACAACTTTTGTTTTCATATCTAAGTA
rJMSF010K16+ AGGTTGTTGATCGGCGCCTCTGTAAGAAACATATACAACTTTTGTTTTCATATCTAAGTA
rJMSF032O13+ AGGTTGTTGATCGGCGCCTCTGTAAGAAACATATACAACTTTTGTTTTCATATCTAAGTA
____________________________________________________________
consensus AGGTTGTTGATCGGCGCCTCTGTAAGAAACATATACAACTTTTGTTTTCATATCTAAGTA
. : . : . : . : . : . :
rJMSF006H02+ TTTATTGCCCAATGAGAAGGCTGGAACAATTGTCCAAAGCTGTACCATATAACTCTGTAT
rJMSF010K16+ TTTATTGCCCAATGAGAAGGCTGGAACAATTGTCCAAAGCTGTACCATATAACTCTGTAT
rJMSF032O13+ TTTATTGCCCAATGAGAAGGCTGGAACAATTGTCCAAAGCTGTACCATATAACTCTGTAT
____________________________________________________________
consensus TTTATTGCCCAATGAGAAGGCTGGAACAATTGTCCAAAGCTGTACCATATAACTCTGTAT
. : . : . : . : . : . :
rJMSF006H02+ ATACTTTGCTGCTGAGATGTGGCTAGCAGCCAAAACTAGTCACCTGACATTTAATCTTCT
rJMSF010K16+ ATACTTTGCTGCTGAGATGTGGCTAGCAGCCAAAACTAGTCACCTGACATTTAATCTTCT
rJMSF032O13+ ATACTTTGCTGCTGAGATGTGGCTAGCAGCCAAAACTAGTCACCTGACATTTAATCTTCT
____________________________________________________________
consensus ATACTTTGCTGCTGAGATGTGGCTAGCAGCCAAAACTAGTCACCTGACATTTAATCTTCT
. : . : . : . : . : . :
rJMSF006H02+ NGGGCATGTATCTCTCGCCCCCGCCCCCCACCCCCTGGGATTGTACAGACTATAGAATTC
rJMSF010K16+ TGGGCATGTATCTCTCGCCCCCGCCCCCCACCCCCTGGGATTGTACAGACTATAGAATTC
rJMSF032O13+ TGGGCATGTATCTCTCG-CCCCGCCCCCCACCCCCTGGGATTGTACAGACTATAGAATTC
____________________________________________________________
consensus TGGGCATGTATCTCTCGCCCCCGCCCCCCACCCCCTGGGATTGTACAGACTATAGAATTC
. : . : . : . : . : . :
rJMSF006H02+ CAAAGGTTCATTTGGGTTTGAA
rJMSF010K16+ CAAAGGTTCATTTGGGTTTGAACTGTGCATAGTAGTTGTTGTATCAAAATTGC
rJMSF032O13+ CAAAGGTTCATTTGGGTTTGAACTGTGCATAGTAGTTGTTGTATCAAAATTGCTGTTGAT
____________________________________________________________
consensus CAAAGGTTCATTTGGGTTTGAACTGTGCATAGTAGTTGTTGTATCAAAATTGCTGTTGAT