Contig 010011:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031E15Sequence659007940 (3)emb|CDP08938.1|5e-67unnamed protein product [Coffea canephora]812010011 (2)gb|KDO73121.1|1e-77hypothetical protein CISIN_1g003454mg [Citrus sinensis]
JMSF047O12Sequence681007940 (3)ref|XP_009606445.1|3e-83PREDICTED: V-type proton ATPase subunit a1-like isoform X1 [Nicotiana tomentosi264010011 (2)

Alignment

This contig is upended


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rJMSF031E15+                                    CAAGGTCCATCATATGGAATGTTGGAACCTCTGA
                      ____________________________________________________________
consensus                                       CAAGGTCCATCATATGGAATGTTGGAACCTCTGA
 
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rJMSF031E15+          GATGGATATGGAGGAACCTGGATCAGCAAGGCCACACCATGAGGACTTCNATTTTAGTGA
                      ____________________________________________________________
consensus             GATGGATATGGAGGAACCTGGATCAGCAAGGCCACACCATGAGGACTTCNATTTTAGTGA
 
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rJMSF031E15+          GATTTTTGTTCATCAAATGATACACTCTATTGAGTTCGTCCTTGGTGCCGTGTCTAATAC
                      ____________________________________________________________
consensus             GATTTTTGTTCATCAAATGATACACTCTATTGAGTTCGTCCTTGGTGCCGTGTCTAATAC
 
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rJMSF031E15+          AGCATCATATCTACGGCTATGGGCTTTGAGTTTGGCTCACTCAGAACTGTCTACCGTCTT
                      ____________________________________________________________
consensus             AGCATCATATCTACGGCTATGGGCTTTGAGTTTGGCTCACTCAGAACTGTCTACCGTCTT
 
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rJMSF031E15+          CTATGAGAAAGTTCTCCTCCTTGCTTGGGGATATGATAACGTGTTCATACGACTGGTGGG
                      ____________________________________________________________
consensus             CTATGAGAAAGTTCTCCTCCTTGCTTGGGGATATGATAACGTGTTCATACGACTGGTGGG
 
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rJMSF031E15+          TTTGGCAGTTTTTGCGTTTGCAACAGCATTTATACTACTCATGATGGAGACACTAAGTGC
                      ____________________________________________________________
consensus             TTTGGCAGTTTTTGCGTTTGCAACAGCATTTATACTACTCATGATGGAGACACTAAGTGC
 
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rJMSF031E15+          TTTTCTTCATGCACTGCGTCTTCATTGGGTGGAATTTCAGAACAAGTTTTACCATGGTGA
                      ____________________________________________________________
consensus             TTTTCTTCATGCACTGCGTCTTCATTGGGTGGAATTTCAGAACAAGTTTTACCATGGTGA
 
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rJMSF031E15+          TGGCTATAAGTTCAAGCCGTTCTCCTTCGCGTTGTTAGCGGATGATGACGATTAGTAGAT
                      ____________________________________________________________
consensus             TGGCTATAAGTTCAAGCCGTTCTCCTTCGCGTTGTTAGCGGATGATGACGATTAGTAGAT
 
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rJMSF031E15+          ATGTGTTACCATTCTTTTTGGAATTGTTGGGTGAAGATGGCAAATGGGAAGAGCAATAGT
                      ____________________________________________________________
consensus             ATGTGTTACCATTCTTTTTGGAATTGTTGGGTGAAGATGGCAAATGGGAAGAGCAATAGT
 
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rJMSF047O12+                                GGGAGATCAGAGGATGACTTCTTACAGACAGACAGGAC
rJMSF031E15+          AAAAGACACTACCTTACCATCTGGGAGATCAGAGGATGACTTCTTACAGACAGACAGGAC
                      ____________________________________________________________
consensus             AAAAGACACTACCTTACCATCTGGGAGATCAGAGGATGACTTCTTACAGACAGACAGGAC
 
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rJMSF047O12+          CCAGTTTNNGCNGACTACAATTNTCCACTTTCTTACCATAAAAAAATCTTATACGGCTCC
rJMSF031E15+          CCAGTTTTTGCTGACTACAATTTTCCACTTTCTTACCATAAAAAAATCTTATACGGCTCC
                      ____________________________________________________________
consensus             CCAGTTTTTGCTGACTACAATTTTCCACTTTCTTACCATAAAAAAATCTTATACGGCTCC
 
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rJMSF047O12+          CCGCTTCANGTCAATAGCTGTTAACAAATAGATTNTTGTACATCNTTCTTTACCANATGT
rJMSF031E15+          CCGCTTCATGTCAATAGCTGTTAACAAATAGATTTTTGTACATCTTTCTTTACCATATGT
                      ____________________________________________________________
consensus             CCGCTTCATGTCAATAGCTGTTAACAAATAGATTTTTGTACATCTTTCTTTACCATATGT
 
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rJMSF047O12+          AGTTNGTANAAAGGGAATTCTCTATNCCATATATCTTCAATGGTTNGTAATCTTTTTTAG
rJMSF031E15+          AGTTTGTAAAAAGGGAATTCTTTATACCATATATCTTCAA-GGTTTGTAATCTTTTTTA-
                      ____________________________________________________________
consensus             AGTTTGTAAAAAGGGAATTCTTTATACCATATATCTTCAATGGTTTGTAATCTTTTTTAG
 
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rJMSF047O12+          CAGGTTTCTCTCTGATTCACGAGCAGTA                                
rJMSF031E15+          CAGGTTTCTCTCTGATTCACGAGCAGTACGAGTCCCCGAGTTATACTTTTGTAGGTCTGA
                      ____________________________________________________________
consensus             CAGGTTTCTCTCTGATTCACGAGCAGTACGAGTCCCCGAGTTATACTTTTGTAGGTCTGA