Contig 010006:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030G19Sequence622006574 (2)ref|NP_001274854.1|3e-46external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Solan710010006 (2)ref|XP_009761586.1|3e-117PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochond
JMSF036H10Sequence646006574 (2)sp|M1BYJ7.1|ENDB1_SOLTU6e-93RecName: Full=External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitoch747010006 (2)ref|XP_009761586.1|4e-104PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochond

Alignment

This contig is upended


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rJMSF036H10+                                  AACAGATGAATGGTTAAGAGTAAAAGGCTGTGAGGG
                      ____________________________________________________________
consensus                                     AACAGATGAATGGTTAAGAGTAAAAGGCTGTGAGGG
 
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rJMSF036H10+          TGTCTATGCTCTTGGTGATTGTGCAACTGTAGATCAACGTAAAATAATGGAAGATATTAC
rJMSF030G19+                    CTTGGTGATTGTGCAACTGTAGATCAACGTAAAATAATGGAAGATATTAC
                      ____________________________________________________________
consensus             TGTCTATGCTCTTGGTGATTGTGCAACTGTAGATCAACGTAAAATAATGGAAGATATTAC
 
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rJMSF036H10+          GAGCA-TTTCAAAGCAGCAGATAAAGATAATTCTGGCACCTTAACTGTTGACGAATTTGA
rJMSF030G19+          GAGCATTTTCAAAGCAGCAGATAAAGATAATTCTGGCACCTTAACTGTTGACGAATTTGA
                      ____________________________________________________________
consensus             GAGCATTTTCAAAGCAGCAGATAAAGATAATTCTGGCACCTTAACTGTTGACGAATTTGA
 
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rJMSF036H10+          AGACGTTATTGAAGATATCATCATTAGTTACCCCCAAGTTGAACTGTATGTGAAGAGCAA
rJMSF030G19+          AGACGTTATTGAAGATATCATCATTAGTTACCCCCAAGTTGAACTGTATGTGAAGAGCAA
                      ____________________________________________________________
consensus             AGACGTTATTGAAGATATCATCATTAGTTACCCCCAAGTTGAACTGTATGTGAAGAGCAA
 
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rJMSF036H10+          GCATCTGCTCGAAGTGGTAGATTTGCTAAGAGATTACGAGGGAAACAAACAAGGTGAGAT
rJMSF030G19+          GCATCTGCTCGAAGTGGTAGATTTGCTAAGAGATTACGAGGGAAACAAACAAGGTGAGAT
                      ____________________________________________________________
consensus             GCATCTGCTCGAAGTGGTAGATTTGCTAAGAGATTACGAGGGAAACAAACAAGGTGAGAT
 
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rJMSF036H10+          AGATATTGAGGGGTTTAAGTTGGCCCTCTCTCATGTAGATTCTCAGACGAAGAGTCTTCC
rJMSF030G19+          AGATATTGAGGGGTTTAAGTTGGCCCTCTCTCATGTAGATTCTCAGACGAAGAGTCTTCC
                      ____________________________________________________________
consensus             AGATATTGAGGGGTTTAAGTTGGCCCTCTCTCATGTAGATTCTCAGACGAAGAGTCTTCC
 
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rJMSF036H10+          TGCGACTGCTCAGGTTGCTGCACAACAAGGTGCATATCTGTCTAGATGCTTTAACCGTTG
rJMSF030G19+          TGCGACTGCTCAGGTTGCTGCACAACAAGGTGCATATCTGTCTAGATGCTTTAACCGTTG
                      ____________________________________________________________
consensus             TGCGACTGCTCAGGTTGCTGCACAACAAGGTGCATATCTGTCTAGATGCTTTAACCGTTG
 
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rJMSF036H10+          GGAACAGTGTAAACGTAATCCAGAAGGCCCTCGTCATTTCAAGGGTTCGGGACGCCATGA
rJMSF030G19+          GGAACAGTGTAAACGTAATCCAGAAGGCCCTCGTCATTTCAAGGGTTCGGGACGCCATGA
                      ____________________________________________________________
consensus             GGAACAGTGTAAACGTAATCCAGAAGGCCCTCGTCATTTCAAGGGTTCGGGACGCCATGA
 
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rJMSF036H10+          ATTCCGCCCTTTCAGTTATAGGCATCTCGGGCAATTCGCTCCCTTAGGCGGGGATCAAGC
rJMSF030G19+          ATTCCGCCCTTTCAGTTATAGGCATCTCGGGCAATTCGCTCCCTTAGGCGGGGATCAAGC
                      ____________________________________________________________
consensus             ATTCCGCCCTTTCAGTTATAGGCATCTCGGGCAATTCGCTCCCTTAGGCGGGGATCAAGC
 
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rJMSF036H10+          AGCAGCAGAGCTTCCTGGAGACTGGGTTTCCATGGGTCGAAGCACGCAGTGGCTATGGTA
rJMSF030G19+          AGCAGCAGAGCTTCCTGGAGACTGGGTTTCCATGGGTCGAAGCACGCAGTGGCTATGGTA
                      ____________________________________________________________
consensus             AGCAGCAGAGCTTCCTGGAGACTGGGTTTCCATGGGTCGAAGCACGCAGTGGCTATGGTA
 
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rJMSF036H10+          TTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACGAGAATCCTTGTTGTGGCTGATTG
rJMSF030G19+          TTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACGAGAATCCTTGTTGTGGCTGATTG
                      ____________________________________________________________
consensus             TTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACGAGAATCCTTGTTGTGGCTGATTG
 
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rJMSF036H10+          GACAAGACGATATATCTTTGGAAGGGATTCGAGCCGTATTTGATGCTTCCTTGTTGTGGT
rJMSF030G19+          GACAAGACGATATATCTTTGGAAGGGATTCGAGCCGTATTTGATGCTTCCTTGTTGTGGT
                      ____________________________________________________________
consensus             GACAAGACGATATATCTTTGGAAGGGATTCGAGCCGTATTTGATGCTTCCTTGTTGTGGT
 
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rJMSF036H10+          TTATGTGTGTTTCTCTTCTGTGTGTATTCTGTTTCTTTCTGGT                 
rJMSF030G19+          TTATGTGTGTTTCTCTTCTGTGTGTATTCTGTTTCTTTCTGGTTCTTAAACCCAAAATGA
                      ____________________________________________________________
consensus             TTATGTGTGTTTCTCTTCTGTGTGTATTCTGTTTCTTTCTGGTTCTTAAACCCAAAATGA