Contig 010004:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019L21Sequence248000812 (3)736010004 (2)ref|XP_009789545.1|2e-63PREDICTED: crt homolog 3 [Nicotiana sylvestris]
JMSF030B21Sequence660000812 (3)ref|XP_009603801.1|2e-17PREDICTED: crt homolog 3 isoform X2 [Nicotiana tomentosiformis]631010004 (2)ref|XP_011009129.1|150PREDICTED: uncharacterized protein LOC105114312 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019L21+ GCTCGTAAGTTGAAGGGTGGT
                      ____________________________________________________________
consensus GCTCGTAAGTTGAAGGGTGGT
 
. : . : . : . : . : . :
rJMSF019L21+ ACAGTGGATCTATTNGTTGTGAACACTTTTGGATCTACTTTCCAGTTTTTATAAGCCTCC
                      ____________________________________________________________
consensus ACAGTGGATCTATTNGTTGTGAACACTTTTGGATCTACTTTCCAGTTTTTATAAGCCTCC
 
. : . : . : . : . : . :
rJMSF019L21+ TCCTCCCTTTTTTGTCAAAGTTATGGGGTATCCCCTTTTTTCAATTGCCAACGTATGTAA
                      ____________________________________________________________
consensus TCCTCCCTTTTTTGTCAAAGTTATGGGGTATCCCCTTTTTTCAATTGCCAACGTATGTAA
 
. : . : . : . : . : . :
rJMSF019L21+ AAGATGGCGCAGCCTGCTTTTTGAACCTCGGAACAATACAGGGATGTGATGGTGCACCTT
rJMSF030B21+ GGAACAATACAGGGATGTGATGGTGCACCTT
                      ____________________________________________________________
consensus AAGATGGCGCAGCCTGCTTTTTGAACCTCGGAACAATACAGGGATGTGATGGTGCACCTT
 
. : . : . : . : . : . :
rJMSF019L21+ TGTTACCATTGCTGTTTGTCATCGTCAACATGGGTTTCAATATATCGTTGTTACACCTGC
rJMSF030B21+ TGGTACCATTGCTGTTTGTCATCGTCAACATGGGTTTCAATATATCGTTGTTACACCCGC
                      ____________________________________________________________
consensus TGTTACCATTGCTGTTTGTCATCGTCAACATGGGTTTCAATATATCGTTGTTACACCTGC
 
. : . : . : . : . : . :
rJMSF019L21+ TCAAGATCTCCTCTGCTGTGGTATCTTGCCTTGCATCCACATTTTCTGTTCCAATATCGG
rJMSF030B21+ TCAAGATCTCCTCTGCTGTGGTATCTTGCCTTGCATCCACATTTTCTGTTCCAATATCGG
                      ____________________________________________________________
consensus TCAAGATCTCCTCTGCTGTGGTATCTTGCCTTGCATCCACATTTTCTGTTCCAATATCGG
 
. : . : . : . : . : . :
rJMSF019L21+ TGTTTATCTTCACGCTTCCATTACCATATCTCGGAGTTGCATCATCTCTACCTCCCGGCT
rJMSF030B21+ TGTTTATCTTCACGCTTCCATTACCATATCTCGGAGTTGCATCATCTCTACCTCCCGGCT
                      ____________________________________________________________
consensus TGTTTATCTTCACGCTTCCATTACCATATCTCGGAGTTGCATCATCTCTACCTCCCGGCT
 
. : . : . : . : . : . :
rJMSF019L21+ TCATAGTTGGTGCTGCCATCCTTGTTCTGGGAATGCTTATTTATGCTTGGACACCATCAC
rJMSF030B21+ TCATAGTTGGTGCTGCCATCCTTGTTCTGGGAATGCTTATTTATGCTTGGACACCATCAC
                      ____________________________________________________________
consensus TCATAGTTGGTGCTGCCATCCTTGTTCTGGGAATGCTTATTTATGCTTGGACACCATCAC
 
. : . : . : . : . : . :
rJMSF019L21+ TTCACATGGCTAAAGCAAGCACCTGATTCTGTTCTGCCCATCACCAATGTGTTTGCCATC
rJMSF030B21+ TTCACATGGCTAAAGCAAGCACCTGATTCTGTTCTGCCCATCACCAATGTGTTTGCCATC
                      ____________________________________________________________
consensus TTCACATGGCTAAAGCAAGCACCTGATTCTGTTCTGCCCATCACCAATGTGTTTGCCATC
 
. : . : . : . : . : . :
rJMSF019L21+ ATTCTCATCAAATTCTGTGGCGCTGCACCTCAACTGTTGCCATATGCATTCTGGGGAAGA
rJMSF030B21+ ATTCTCATCAAATTCTGTGGCGCTGCACCTCAACTGTTGCCATATGCATTCTGGGGAAGA
                      ____________________________________________________________
consensus ATTCTCATCAAATTCTGTGGCGCTGCACCTCAACTGTTGCCATATGCATTCTGGGGAAGA
 
. : . : . : . : . : . :
rJMSF019L21+ CAATGGTTTGTAAAATTAAGTTGGCAATAAAACAAGACAGGATCCCCTGGTTCAACACAA
rJMSF030B21+ CAATGGTTTGTAAAATTAAGTTGGCAATAAAACAAGACAGGATCCCCTGGTTCAACACAA
                      ____________________________________________________________
consensus CAATGGTTTGTAAAATTAAGTTGGCAATAAAACAAGACAGGATCCCCTGGTTCAACACAA
 
. : . : . : . : . : . :
rJMSF019L21+ TTGTTGATTGGGTTTTTTTGTTGTGTGTGTATACTTTAAGAATAGGAAGCTAGATTGAGC
rJMSF030B21+ TTGTTGATTGGGTTTTTTTGTTGTGTGTGTATACTTTAAGAATAGGAAGCTAGATTGAGC
                      ____________________________________________________________
consensus TTGTTGATTGGGTTTTTTTGTTGTGTGTGTATACTTTAAGAATAGGAAGCTAGATTGAGC
 
. : . : . : . : . : . :
rJMSF019L21+ ATGCCGGTCGGAGCATAACTTTATTGTATTTTTTAAGGAAAAGACTAAAAA
rJMSF030B21+ ATGCCGGTCGGAGCATAACTTTATTGTATTTTTTAAGGAAAAGACTTAAAAATTGTAATG
                      ____________________________________________________________
consensus ATGCCGGTCGGAGCATAACTTTATTGTATTTTTTAAGGAAAAGACTTAAAAATTGTAATG
 
. : . : . : . : . : . :
rJMSF030B21+ GTTTAGAATACTGAACATTGTTTTTTTGATATTTGAGAACACACAAGTAGGTTATATGGT
                      ____________________________________________________________
consensus GTTTAGAATACTGAACATTGTTTTTTTGATATTTGAGAACACACAAGTAGGTTATATGGT