Contig 009994:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN020I18+                             TTGCAACTATATATAAAGAAATCAAATTCACAGGACTTTGAC
JMFN004O13+              TTTTTTTGGGTAATGTTGCAACTATATATAAAGAAATCAAATTCACAGGACTTTGAC
                      ____________________________________________________________
consensus                TTTTTTTGGGTAATGTTGCAACTATATATAAAGAAATCAAATTCACAGGACTTTGAC
 
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JMFN020I18+           CAATATAATACAAATATATACAACATGATGGCACATAAGACTCCAACTTGACCCTTGGCT
JMFN004O13+           CAATATAATACAAATATATACAACATGATGGCACATAAGACTCCAACTTGACCCTTGGCT
rJMSF027M08-                  TACAAATATATACAACATGATGGCACATAAGACTCCAACTTGACCCTTGGCT
                      ____________________________________________________________
consensus             CAATATAATACAAATATATACAACATGATGGCACATAAGACTCCAACTTGACCCTTGGCT
 
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JMFN020I18+           ATCCTATCAAATGCAATGAAGAAACAGTAACAGTAATGACCCAGTCCTAAATTTAAAAAT
JMFN004O13+           ATCCTATCAAATGCAATGAAGAAACAGTAACAGTAATGACCCAGTCCTAAATTTAAAAAT
rJMSF027M08-          ATCCTATCAAATGCAATGAAGAAACAGTAACAGTAATGACCCAGTCCTAAATTTAAAAAT
                      ____________________________________________________________
consensus             ATCCTATCAAATGCAATGAAGAAACAGTAACAGTAATGACCCAGTCCTAAATTTAAAAAT
 
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JMFN020I18+           ACATATATAATAACTTAATGCTAAAAAGTAAAAACAGCTATCAACCAGGTCTAACCTTAT
JMFN004O13+           ACATATATAATAACTTAATGCTAAAAAGTAAAAACAGCTATCAACCAGGTCTAACCTTAT
rJMSF027M08-          ACATATATAATAACTTAATGCTAAAAAGTAAAAACAGCTATCAACCAGGTCTAACCTTAT
                      ____________________________________________________________
consensus             ACATATATAATAACTTAATGCTAAAAAGTAAAAACAGCTATCAACCAGGTCTAACCTTAT
 
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JMFN020I18+           TAACAGCAAGATGATGTTATACACTTAATACTTACACCCAGCTATGAGGGATAGGATGAT
JMFN004O13+           TAACAGCAAGATGATGTTATACACTTAATACTTACACCCAGCTATGAGGGATAGGATGAT
rJMSF027M08-          TAACAGCAAGATGATGTTATACACTTAATACTTACACCCAGCTATGAGGGATAGGATGAT
                      ____________________________________________________________
consensus             TAACAGCAAGATGATGTTATACACTTAATACTTACACCCAGCTATGAGGGATAGGATGAT
 
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JMFN020I18+           CTTTTCCAGGCTCTGATGGGGCATTACCCACTTGATTGGCGTTGCTAGTTCCAGCAGCGT
JMFN004O13+           CTTTTCCAGGCTCTGATGGGGCATTACCCACTTGATTGGCGTTGCTAGTTCCAGCAGCGT
rJMSF027M08-          CTTTTCCAGGCTCTGATGGGGCATTACCCACTTGATTGGCGTTGCTAGTTCCAGCAGCGT
                      ____________________________________________________________
consensus             CTTTTCCAGGCTCTGATGGGGCATTACCCACTTGATTGGCGTTGCTAGTTCCAGCAGCGT
 
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JMFN020I18+           T                                                           
JMFN004O13+           TACCTCCCATAAGCATTGCCATTAAGCCACCCCCATGAACTCTGCCTTCTGGTAGTGAAA
rJMSF027M08-          TACCTCCCATAAGCATTGCCATTAAGCCACCCCCATGAACTCTGCCTTCTGGTAGTGAAA
                      ____________________________________________________________
consensus             TACCTCCCATAAGCATTGCCATTAAGCCACCCCCATGAACTCTGCCTTCTGGTAGTGAAA
 
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JMFN004O13+           ATTGCGTCACTGGAGCATTATGAGTTAGGAAGTTAACTTGCGGTGGAGTCGCCGCATTAG
rJMSF027M08-          ATTGCGTCACTGGAGCATTATGAGTTAGGAAGTTAACTTGCGGTGGAGTCGCCGCATTAG
                      ____________________________________________________________
consensus             ATTGCGTCACTGGAGCATTATGAGTTAGGAAGTTAACTTGCGGTGGAGTCGCCGCATTAG
 
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JMFN004O13+           TCAATCCATGTGGATGGGTTGCCAAGCCAGGTGGAGTCACAGCATTAGTCAATCCATGTG
rJMSF027M08-          TCAATCCATGTGGATGGGTTGCCAAGCCAGGTGGAGTCACAGCATTAGTCAATCCATGTG
                      ____________________________________________________________
consensus             TCAATCCATGTGGATGGGTTGCCAAGCCAGGTGGAGTCACAGCATTAGTCAATCCATGTG
 
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JMFN004O13+           GATGGGTTGCCAAGCCAGGTGGAGTCGCAGCATTAGTCAATCCAT               
rJMSF027M08-          GATGGGTTGCCAAGCCAGGTGGAGTCGCAGCATTAGTCAATCCATGTGGATGGGTTGCCA
                      ____________________________________________________________
consensus             GATGGGTTGCCAAGCCAGGTGGAGTCGCAGCATTAGTCAATCCATGTGGATGGGTTGCCA
 
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rJMSF027M08-          AGCCAGTAGCAGCAAATCCGAATGTGAAGGATTGTGGCACTTGAAGTGCTGGGGTAACTG
                      ____________________________________________________________
consensus             AGCCAGTAGCAGCAAATCCGAATGTGAAGGATTGTGGCACTTGAAGTGCTGGGGTAACTG
 
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rJMSF027M08-          GAGCACTGCTTTGTATTTGCTTGTCTATCACCTCTGCATTATGGGCAGCACAGAGGCCTG
                      ____________________________________________________________
consensus             GAGCACTGCTTTGTATTTGCTTGTCTATCACCTCTGCATTATGGGCAGCACAGAGGCCTG
 
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rJMSF027M08-          ATTTTCCTCTTGCAAATTTATCACACGGAGCAGTTGCTTGATCACCAAACTCCGATCCCA
                      ____________________________________________________________
consensus             ATTTTCCTCTTGCAAATTTATCACACGGAGCAGTTGCTTGATCACCAAACTCCGATCCCA
 
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rJMSF027M08-          ACTGTCCCCAACAGCAACGCTTGCCTCCGCCATGTGCCTTGCAAAAATCAGTACTGCCTT
                      ____________________________________________________________
consensus             ACTGTCCCCAACAGCAACGCTTGCCTCCGCCATGTGCCTTGCAAAAATCAGTACTGCCTT