Contig 009989:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027B09Sequence580007914 (4)ref|XP_009591477.1|5e-29PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]748009989 (4)
JMSF027I04Sequence585007914 (4)ref|XP_009591477.1|5e-41PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]709009989 (4)
JMSF030K24Sequence613007914 (4)ref|XP_009591477.1|3e-42PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]700009989 (4)
JMSF046C09Sequence825007914 (4)ref|XP_009591477.1|3e-52PREDICTED: protein MODIFIER OF SNC1 11-like [Nicotiana tomentosiformis]721009989 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF046C09+ TTCAACCTATTTCNTAGGTGTAAGAT
rJMSF027B09+ TCTTCAACCTATTTCTTAGGTGTAAGAT
                      ____________________________________________________________
consensus TCTTCAACCTATTTCTTAGGTGTAAGAT
 
. : . : . : . : . : . :
rJMSF030K24+ TGCAATCCTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATG-TTTTGTTG
rJMSF046C09+ CATTGCAATCTTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATGTTTTTGTTG
rJMSF027I04+ TGCAATCTTGAGGTTTCAGTTCATCAAAAAATATAAATCATAAGTATGTTTTTGTTG
rJMSF027B09+ CATTGCAATCTTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATGTTTTTGTTG
                      ____________________________________________________________
consensus CATTGCAATCTTGAGGTTTCAGTTCATCAGAAAATATAAATCATAAGTATGTTTTTGTTG
 
. : . : . : . : . : . :
rJMSF030K24+ CATTTAGAGATCAATTAGGANCCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
rJMSF046C09+ CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
rJMSF027I04+ CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
rJMSF027B09+ CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
                      ____________________________________________________________
consensus CATTTAGAGATCAATTAGGAACCTTCTAACTTCCAGTTGCATCCATAGATCTTTGTTTGT
 
. : . : . : . : . : . :
rJMSF030K24+ TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
rJMSF046C09+ TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
rJMSF027I04+ TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
rJMSF027B09+ TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
                      ____________________________________________________________
consensus TTCAACATGCTCATAGACATTCTTGGCAATCTTAGGCTTTTTAGGAAAGGTAAGGCTAAC
 
. : . : . : . : . : . :
rJMSF030K24+ ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
rJMSF046C09+ ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
rJMSF027I04+ ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
rJMSF027B09+ ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
                      ____________________________________________________________
consensus ATTTTTGGAGTTATGTGGTAAGTAATATCTATGGCAAGTCTTTACAATCATTTACCATGA
 
. : . : . : . : . : . :
rJMSF030K24+ TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
rJMSF046C09+ TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
rJMSF027I04+ TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
rJMSF027B09+ TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
                      ____________________________________________________________
consensus TAACAAGGCTATTCTGCATAAAGTTTAAAACACCATGATTATGTGCCCATGTTTACCTTA
 
. : . : . : . : . : . :
rJMSF030K24+ GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
rJMSF046C09+ GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
rJMSF027I04+ GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
rJMSF027B09+ GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
                      ____________________________________________________________
consensus GTGTCAATTTCGTACTCTGCATTTGTGTCCCAATCTGATTTTTCTTTCTTAGAAGTAGAT
 
. : . : . : . : . : . :
rJMSF030K24+ GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
rJMSF046C09+ GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
rJMSF027I04+ GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
rJMSF027B09+ GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
                      ____________________________________________________________
consensus GAGGAAGCACAGCATGATGATGAAATAATCTATTGCAGATCTTTCATTACTTGTGTCTTG
 
. : . : . : . : . : . :
rJMSF030K24+ TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
rJMSF046C09+ TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
rJMSF027I04+ TGTGTGATCGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
rJMSF027B09+ TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
                      ____________________________________________________________
consensus TGTGTGATGGATGATGATTTTGCTTGTTAGGGGTTTTACCGTCGAATTGTTTTCTAGTCT
 
. : . : . : . : . : . :
rJMSF030K24+ TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
rJMSF046C09+ TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
rJMSF027I04+ TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
rJMSF027B09+ TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
                      ____________________________________________________________
consensus TTGGTATTCGAATTTGACATTGTGAGATGGCCATTTTGAAGGGGGTTTGATGCTAAGGAA
 
. : . : . : . : . : . :
rJMSF030K24+ GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
rJMSF046C09+ GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
rJMSF027I04+ GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
rJMSF027B09+ GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACCGCAGTGCAGGAATTAT
                      ____________________________________________________________
consensus GGTGTTTCTGACTGGTCCTACTGGGTGAACCATTTAGGGTGACTGCAGTGCAGGAATTAT
 
. : . : . : . : . : . :
rJMSF030K24+ TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
rJMSF046C09+ TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
rJMSF027I04+ TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
rJMSF027B09+ TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
                      ____________________________________________________________
consensus TATATCACATGTACTTGGAAGAAATTTATTTGTAATTTTTATTTTGGTTAAAATTTTAAA
 
. : . : . : . : . : . :
rJMSF030K24+ AACTTTTAGGTGAGTAGAATTTTCAATATGCTT
rJMSF046C09+ AACTTTTAGGTGAGTAGAATTTTCAATATGCTT
rJMSF027I04+ AACTTTTAGGTGAGTAGAATTTTCAATATGCTT
rJMSF027B09+ AACTTTTAGGTGAGTAGAATTTTCAATATGCTTTTTAGTTGTGGTTGGAAGACAAATCTT
                      ____________________________________________________________
consensus AACTTTTAGGTGAGTAGAATTTTCAATATGCTTTTTAGTTGTGGTTGGAAGACAAATCTT