Contig 009978:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009H21Sequence310009222 (3)emb|CDY49604.1|4e-33BnaA09g03340D [Brassica napus]741009978 (3)emb|CDO98761.1|4e-139unnamed protein product [Coffea canephora]
JMSF013G22Sequence451023158762009978 (3)ref|XP_009592402.1|2e-116PREDICTED: ATP-citrate synthase beta chain protein 2 isoform X2 [Nicotiana tome
JMSF025D14Sequence672009222 (3)ref|XP_010267949.1|2e-86PREDICTED: ATP-citrate synthase beta chain protein 2 [Nelumbo nucifera]696009978 (3)emb|CDO98761.1|4e-124unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G22+                        AACACCATAGTAACTTCTCGGGCAGGAAAAGATNTAGTGTCCTGCC
                      ____________________________________________________________
consensus                           AACACCATAGTAACTTCTCGGGCAGGAAAAGATNTAGTGTCCTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G22+          TTGTTTCAGGTACATTTACAGCCTTTCTTTGTATGAGTAACTACTCCGTACTTAGTAG-T
rJMSF025D14+                                  CACAACACCATAGTAACTTCTCGGGCAGGAAAAGAT
                      ____________________________________________________________
consensus             TTGTTTCAGGTACATTTACAGCCTTTCTTTGTCTTAGTAACTTCTCGGTCCTTAGTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+                             CAGGATTACTGACAATTGGTCCCCGATTTGGTGGGGCTATT
rJMSF013G22+          TAGTAATGTTGCTTGGTAACAGGATTACTGACAATTGGTCCCCGATTTGGTGGGGCTATT
rJMSF025D14+          CTAGTGTCCTGCCTTGTTTCAGGATTACTGACAATTGGTCCCCGATTTGGTGGGGCTATT
                      ____________________________________________________________
consensus             TTGTTGTGTTGCTTTGTTTCAGGATTACTGACAATTGGTCCCCGATTTGGTGGGGCTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          GACGATGCTGCTCGATACTTCAAGGATGCGTATGACAGGGTCCTTACACCTTATGAATTC
rJMSF013G22+          GACGATGCTGCTCGATACTTCAAGGATGCGTATGACAGGGTCCTTACACCTTATGAATTC
rJMSF025D14+          GACGATGCTGCTCGATACTTCAAGGATGCGTATGACAGGGTCCTTACACCTTATGAATTC
                      ____________________________________________________________
consensus             GACGATGCTGCTCGATACTTCAAGGATGCGTATGACAGGGTCCTTACACCTTATGAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          GTGGAAGGTATGAAGAAGAAGGGCATTCGAGTGCCAGGAATTGGTCACAGGATCAAGAGG
rJMSF013G22+          GTGGAAGGTATGAAGAAGAAGGGCATTCGAGTGCCAGGAATTGGTCACAGGATCAAGAGG
rJMSF025D14+          GTGGAAGGTATGAAGAAGAAGGGCATTCGAGTGCCAGGAATTGGTCACAGGATCAAGAGG
                      ____________________________________________________________
consensus             GTGGAAGGTATGAAGAAGAAGGGCATTCGAGTGCCAGGAATTGGTCACAGGATCAAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          GGCGACAACAGAGATAAGAGAGTGGAACTACTGCAACGTTATGCCCGTGAAAATTTCCCT
rJMSF013G22+          GGCGACAACAGAGATAAGAGAGTGGAACTACTGCAACGTTATGCCCGTGAAAATTTCCCT
rJMSF025D14+          GGCGACAACAGAGATAAGAGAGTGGAACTACTGCAACGTTATGCCCGTGAAAATTTCCCT
                      ____________________________________________________________
consensus             GGCGACAACAGAGATAAGAGAGTGGAACTACTGCAACGTTATGCCCGTGAAAATTTCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          AGTGTAAAATACATGGAATATGCAGTGGAGGTTGAGACATACACCCTCTCAAAGGCTAAC
rJMSF013G22+          AGTGTAAAATACATGGAATATGCAGTGGAGGTTGAGACATACACCCTCTCAAAGGCTAAC
rJMSF025D14+          AGTGTAAAATACATGGAATATGCAGTGGAGGTTGAGACATACACCCTCTCAAAGGCTAAC
                      ____________________________________________________________
consensus             AGTGTAAAATACATGGAATATGCAGTGGAGGTTGAGACATACACCCTCTCAAAGGCTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          AACCTAGTCCTTAACGTGGATGGTGCCATTGGTTCCCTGTTCTTGGATCTCCTGGCTGGC
rJMSF013G22+          AACCTAGTCCTTAACGTGGATGGTGCCATTGGTTCCCTGTTCTTGGATCTCCTGGCTGGC
rJMSF025D14+          AACCTAGTCCTTAACGTGGATGGTGCCATTGGTTCCCTGTTCTTGGATCTCCTGGCTGGC
                      ____________________________________________________________
consensus             AACCTAGTCCTTAACGTGGATGGTGCCATTGGTTCCCTGTTCTTGGATCTCCTGGCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          AGTGGAATGTTCAAAAAGGCAGAAATCGATGAAATCGTGGAGATTGGTTACCTTAACGGC
rJMSF013G22+          AGTGGAATGTTCAAAAAGGCAGAAATCGATGAAATCGTGGAGATTGGTTACCTTAACGGC
rJMSF025D14+          AGTGGAATGTTCAAAAAGGCAGAAATCGATGAAATCGTGGAGATTGGTTACCTTAACGGC
                      ____________________________________________________________
consensus             AGTGGAATGTTCAAAAAGGCAGAAATCGATGAAATCGTGGAGATTGGTTACCTTAACGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          CTCTTTGTCTTGGCCCGATCCATTGGTCTCATTGGGCACACGTTTGACCAGAAGAGATTA
rJMSF013G22+          CTCTTTGTCTTGGCCCGATCCATTGGTCTCATTGGGCACACGTTTGACCAGAAGAGATTA
rJMSF025D14+          CTCTTTGTCTTGGCCCGATCCATTGGTCTCATTGGGCACACGTTTGACCAGAAGAGATTA
                      ____________________________________________________________
consensus             CTCTTTGTCTTGGCCCGATCCATTGGTCTCATTGGGCACACGTTTGACCAGAAGAGATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H21+          AAGCAGCCGCTGTACCGCCACCCGTGGGAAGATGTTCTATACACCAAGTGA         
rJMSF013G22+          AAGCAGCCGCTGTACCGCCACCCGTGGGAAGATGTTCTATACACCAAGTGA         
rJMSF025D14+          AAGCAGCCGCTGTACCGCCACCCGTGGGAAGATGTTCTATACACCAAGTGAGTGCAAACA
                      ____________________________________________________________
consensus             AAGCAGCCGCTGTACCGCCACCCGTGGGAAGATGTTCTATACACCAAGTGAGTGCAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025D14+          AGCATTTTCAATCGGAATATTTTGGGTTATCCATTACCATCTCATCCCATGTGTTTCTAT
                      ____________________________________________________________
consensus             AGCATTTTCAATCGGAATATTTTGGGTTATCCATTACCATCTCATCCCATGTGTTTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025D14+          TTGTACCAAGTACTTGATTATTCCTTCCTATTGTAATTTCTGCACAAAGAGAATGGCGTG
                      ____________________________________________________________
consensus             TTGTACCAAGTACTTGATTATTCCTTCCTATTGTAATTTCTGCACAAAGAGAATGGCGTG