Contig 009976:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-                                                                     GG
JMSF015A11-                                                                     GG
rJMSF015A11+                                                                    GG
                      ____________________________________________________________
consensus                                                                       GG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           AATAAGTAACATATATCCCCGCCGGCGCCGGCGCCGAGCTCCCTGTAACAGGGGCTGCGC
JMSF015A11-           AATAAGTAACATATATCCCCGCCGGCGCCGGCGCCGAGCTCCCTGTAACAAGGGCTGCGC
rJMSF015A11+          AATAAGTAACATATATCCCCGCCGGCGCCGGCGCCGAGCTCCCTGTAACAAGGGCTGCGC
                      ____________________________________________________________
consensus             AATAAGTAACATATATCCCCGCCGGCGCCGGCGCCGAGCTCCCTGTAACAAGGGCTGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           CACCGTGAGGGATCCATGTCAGGCGACCACGAGCGCCAGGAGGAACACCCACTTCCGCCG
JMSF015A11-           CACCGTGAGGGATCCATGTCAGGCGACCACGAGCGCCAGGAGGAACACCCACTTCCGCCG
rJMSF015A11+          CACCGTGAGGGATCCATGTCAGGCGACCACGAGCGCCAGGAGGAACACCCACTTCCGCCG
                      ____________________________________________________________
consensus             CACCGTGAGGGATCCATGTCAGGCGACCACGAGCGCCAGGAGGAACACCCACTTCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           CCGGCGAAAACGCCGCCCCTTCTACCGCCACTCGCGGCTTCGTCGTCCTTGTACAAACAG
JMSF015A11-           CCGGCGAAAACGCCGCCCCTTCTACCGCCACTCGCGGCTTCGTCGTCCTTGTACAAACAG
rJMSF015A11+          CCGGCGAAAACGCCGCCCCTTCTACCGCCACTCGCGGCTTCGTCGTCCTTGTACAAACAG
rJMSF025A05+                                                          TTGTACAAACAG
                      ____________________________________________________________
consensus             CCGGCGAAAACGCCGCCCCTTCTACCGCCACTCGCGGCTTCGTCGTCCTTGTACAAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           AACACGTGGTCCCCGGAGACTTTCCGCGACGAGGTGTGGCAGCGGCGGAAAGAGAACCAC
JMSF015A11-           AACACGTGGTCCCCGGAGACTTTCCGCGACGAGGTGTGGCAGCGGCGGAAAGAGAACCAC
rJMSF015A11+          AACACGTGGTCCCCGGAGACTTTCCGCGACGAGGTGTGGCAGCGGCGGAAAGAGAACCAC
rJMSF025A05+          AACACGTGGTCCCCGGAGACTTTCCGCGACGAGGTGTGGCAGCGGCGGAAAGAGAACCAC
                      ____________________________________________________________
consensus             AACACGTGGTCCCCGGAGACTTTCCGCGACGAGGTGTGGCAGCGGCGGAAAGAGAACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           GGGAAGCACCTGAAGCGGCGGAGCAAAAGCGTCACCGATGAAGATCTCAACGAGCTGAAG
JMSF015A11-           GGGAAGCACCTGAAGCGGCGGAGCAAAAGCGTCACCGATGAAGATCTCAACGAGCTGAAG
rJMSF015A11+          GGGAAGCACCTGAAGCGGCGGAGCAAAAGCGTCACCGATGAAGATCTCAACGAGCTGAAG
rJMSF025A05+          GGGAAGCACCTGAAGCGGCGGAGCAAAAGCGTCACCGATGAAGATCTCAACGAGCTGAAG
                      ____________________________________________________________
consensus             GGGAAGCACCTGAAGCGGCGGAGCAAAAGCGTCACCGATGAAGATCTCAACGAGCTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           GCGTGTATCGAACTCGGGTTCGGGTTCGAGTTGGACTCGCCGGAAATGGACCAACGCCTC
JMSF015A11-           GCGTGTATCGAACTCGGGTTCGGGTTCGAGTTGGACTCGCCGGAAATGGACCAACGCCTC
rJMSF015A11+          GCGTGTATCGAACTCGGGTTCGGGTTCGAGTTGGACTCGCCGGAAATGGACCAACGCCTC
rJMSF025A05+          GCGTGTATCGAACTCGGGTTCGGGTTCGAGTTGGACTCGCCGGAAATGGACCAACGCCTC
                      ____________________________________________________________
consensus             GCGTGTATCGAACTCGGGTTCGGGTTCGAGTTGGACTCGCCGGAAATGGACCAACGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           TCCGAGACTTTCCCGGCCTACAGCCTCTTCTACTCCGTCAACAAGCATCTCAACGACACC
JMSF015A11-           TCCGAGACTTTCCCGGCCTACAGCCTCTTCTACTCCGTCAACAAGCATCTCAACGACACC
rJMSF015A11+          TCCGAGACTTTCCCGGCCTACAGCCTCTTCTACTCCGTCAACAAGCATCTCAACGACACC
rJMSF025A05+          TCCGAGACTTTCCCGGCCTACAGCCTCTTCTACTCCGTCAACAAGCATCTCAACGACACC
                      ____________________________________________________________
consensus             TCCGAGACTTTCCCGGCCTACAGCCTCTTCTACTCCGTCAACAAGCATCTCAACGACACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           GTTTCAAAGACCGCCAACGCCTCCGATTGCGACACCGCCTCCTCCGTCGGCAGCCCCGAC
JMSF015A11-           GTTTCAAAG                                                   
rJMSF015A11+          GTTTCAAAGACCGCCAACGCCTCCGATTGCGACACCGCCTCCTCCGTCGGCAGCCCCGAC
rJMSF025A05+          GTTTCAAAGACCGCCAACGCCTCCGATTGCGACACCGCCTCCTCCGTCGGCAGCCCCGAC
                      ____________________________________________________________
consensus             GTTTCAAAGACCGCCAACGCCTCCGATTGCGACACCGCCTCCTCCGTCGGCAGCCCCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           GCCATGTTCGCCCCCGGAGAACGGCCAGAGATTGTGAAGACGAGGTTGAAGCGATGGGCT
rJMSF015A11+          GCCATGTTCGCCCCCGGAGAACGGCCAGAGATTGTGAAGACGAGGTTGAAGCGATGGGCT
rJMSF025A05+          GCCATGTTCGCCCCCGGAGAACGGCCAGAGATTGTGAAGACGAGGTTGAAGCGATGGGCT
                      ____________________________________________________________
consensus             GCCATGTTCGCCCCCGGAGAACGGCCAGAGATTGTGAAGACGAGGTTGAAGCGATGGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           CAAGTGGTTGCCTGTTCTCTGCGTCACTCTTCCAACTAACGTACGGTGATGATGACGACG
rJMSF015A11+          CAAGTGGTTGCCTGTTCTCTGCGTCACTCTTCCAACTAACGTACGGTGATGATGACGACG
rJMSF025A05+          CAAGTGGTTGCCTGTTCTCTGCGTCACTCTTCCAACTAACGTACGGTGATGATGACGACG
                      ____________________________________________________________
consensus             CAAGTGGTTGCCTGTTCTCTGCGTCACTCTTCCAACTAACGTACGGTGATGATGACGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF025A05-           ACGAATGATCAGTACAGTGTAACCAAT                                 
rJMSF015A11+          ACGAATGATCAGTACAGTGTAACCAATTAAAGAC                          
rJMSF025A05+          ACGAATGATCAGTACAGTGTAACCAATTAAAGACAGGTTTTTGTTTTGTTTTTTTCGATA
                      ____________________________________________________________
consensus             ACGAATGATCAGTACAGTGTAACCAATTAAAGACAGGTTTTTGTTTTGTTTTTTTCGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025A05+          ATGTTTGTGTTACAAATTGATGATGATGACGATGATTTGCCATGTCTTTTCTTATGCTCT
                      ____________________________________________________________
consensus             ATGTTTGTGTTACAAATTGATGATGATGACGATGATTTGCCATGTCTTTTCTTATGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025A05+          CTATCGTGTTCTTACTCCTTTTTTAGAGCAATGATTGTGAGAGGGAGGGATGGCCGGAGA
                      ____________________________________________________________
consensus             CTATCGTGTTCTTACTCCTTTTTTAGAGCAATGATTGTGAGAGGGAGGGATGGCCGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025A05+          TTACTCTCTCTTTCACGATTCCCATTCCCATTTGTAGCTAATATGATGATAATTAGTATA
                      ____________________________________________________________
consensus             TTACTCTCTCTTTCACGATTCCCATTCCCATTTGTAGCTAATATGATGATAATTAGTATA