Contig 009957:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008A14Sequence265005060 (3)ref|XP_009592744.1|7e-51PREDICTED: polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Nic765009957 (2)ref|XP_011069965.1|4e-11PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
JMSF020B23Sequence595005060 (3)ref|XP_009759527.1|3e-38PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic 744009957 (2)ref|XP_011069965.1|1e-07PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic

Alignment

This contig is upended


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rJMSF008A14+                      AGATCAATGACAAAGGACAACNTAGGTTAAGCCGTCGTGCCTTGTTGC
rJMSF020B23+                                              GGTTAAGCCGTCGTGCCTTGTTGC
                      ____________________________________________________________
consensus                         AGATCAATGACAAAGGACAACNTAGGTTAAGCCGTCGTGCCTTGTTGC
 
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rJMSF008A14+          CCAATCCTGACCCAGAGAAACCCAAGCAACAAGCTGTTAGCCTTGCAAAGGACACTTCTG
rJMSF020B23+          CCAATCCTGACCCAGAGAAACCCAAGCAACAAGCTGTTAGCCTTGCAAAGGACACTTCTG
                      ____________________________________________________________
consensus             CCAATCCTGACCCAGAGAAACCCAAGCAACAAGCTGTTAGCCTTGCAAAGGACACTTCTG
 
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rJMSF008A14+          TTTCACAGAAATCTCTTGAGAAAAGTAAAACTAAGTCAAGTGCGCCGAAGGATGATTTAG
rJMSF020B23+          TTTCACAGAAATCTCTTGAGAAAAGTAAAACTAAGTCAAGTGCGCCGAAGGATGATTTAG
                      ____________________________________________________________
consensus             TTTCACAGAAATCTCTTGAGAAAAGTAAAACTAAGTCAAGTGCGCCGAAGGATGATTTAG
 
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rJMSF008A14+          AAATGGCGAATGCTAATCCAGCAAAGGATAAGAATTCCACATTNGAAAATAAAAAGCCAC
rJMSF020B23+          AAATGGCGAATGCTAATCCAGCAAAGGATAAGAATTCCACATTAGAAAATAAAAAGCCAC
                      ____________________________________________________________
consensus             AAATGGCGAATGCTAATCCAGCAAAGGATAAGAATTCCACATTAGAAAATAAAAAGCCAC
 
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rJMSF008A14+          CCAAGAAATTGGTCAGCCCTGTGAAGGATGGGCAAAATACTGACAAAGACAAGGCAATGA
rJMSF020B23+          CCAAGAAATTGGTCAGCCCTGTGAAGGATGGGCAAAATACTGACAAAGACAAGGCAATGA
                      ____________________________________________________________
consensus             CCAAGAAATTGGTCAGCCCTGTGAAGGATGGGCAAAATACTGACAAAGACAAGGCAATGA
 
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rJMSF008A14+          AAGGAAGTGATAAATCAGTTGTCAACCTCTCAAGTAAAAGTGAAGGTGCACTGGTGAATG
rJMSF020B23+          AAGGAAGTGATAAATCAGTTGTCAACCTCTCAAGTAAAAGTGAAGGTGCACTGGTGAATG
                      ____________________________________________________________
consensus             AAGGAAGTGATAAATCAGTTGTCAACCTCTCAAGTAAAAGTGAAGGTGCACTGGTGAATG
 
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rJMSF008A14+          GAGAGGCCAAAGTTGGCTAGCAATCTGCTCTATGTTTCGCTCCTTTTTTCTAATGCAGTG
rJMSF020B23+          GAGAGGCCAAAGTTGGCTAGCAATCTGCTCTATGTTTCGCTCCTTTTTTCTAATGCAGTG
                      ____________________________________________________________
consensus             GAGAGGCCAAAGTTGGCTAGCAATCTGCTCTATGTTTCGCTCCTTTTTTCTAATGCAGTG
 
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rJMSF008A14+          GATGATTTTCCCTTTCAGCAAATGAAGGAATTCATAACTGGACCTTGACAGAACCACCAT
rJMSF020B23+          GATGATTTTCCCTTTCAGCAAATGAAGGAATTCATAACTGGACCTTGACAGAACCACCAT
                      ____________________________________________________________
consensus             GATGATTTTCCCTTTCAGCAAATGAAGGAATTCATAACTGGACCTTGACAGAACCACCAT
 
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rJMSF008A14+          ATGAAAGGCAAGTGTATTGACTTGAGAGGAAGGGGCAGTTGCCATATGAAGTGAGTTATT
rJMSF020B23+          ATGAAAGGCAAGTGTATTGACTTGAGAGGAAGGGGCAGTTGCCATATGAAGTGAGTTATT
                      ____________________________________________________________
consensus             ATGAAAGGCAAGTGTATTGACTTGAGAGGAAGGGGCAGTTGCCATATGAAGTGAGTTATT
 
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rJMSF008A14+          TTCATACGACAATGATCGGGAAAAGGGATACCCCATGGATCACTCATTGGAAATATATAT
rJMSF020B23+          TTCATACGACAATGATCGGGAAAAGGGATACCCCATGGATCACTCATTGGAAATATATAT
                      ____________________________________________________________
consensus             TTCATACGACAATGATCGGGAAAAGGGATACCCCATGGATCACTCATTGGAAATATATAT
 
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rJMSF008A14+          ATTCTCCACGTTGTGCATTTTGATCAGCTTCTGTCGTTGAGTAGGCTCATGGATGGAGAA
rJMSF020B23+          ATTCTCCACGTTGTGCATTTTGATCAGCTTCTGTCGTTGAGTAGGCTCATGGATGGAGAA
                      ____________________________________________________________
consensus             ATTCTCCACGTTGTGCATTTTGATCAGCTTCTGTCGTTGAGTAGGCTCATGGATGGAGAA
 
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rJMSF008A14+          ATCTCAGGCACCATACATTGGAAGCCAATTCAGGTGAACTGTATTAAAATAGAAAAGCCA
rJMSF020B23+          ATCTCAGGCACCATACATTGGAAGCCAATTCAGGTGAACTGTATTAAAATAGAAAAGCCA
                      ____________________________________________________________
consensus             ATCTCAGGCACCATACATTGGAAGCCAATTCAGGTGAACTGTATTAAAATAGAAAAGCCA
 
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rJMSF008A14+          AATTAC                                                      
rJMSF020B23+          AATTACCTCGAGTTTGGAAGAAACTAATTGTGATTGCTTCAAGTTCTGGCCAGTGTCTGT
                      ____________________________________________________________
consensus             AATTACCTCGAGTTTGGAAGAAACTAATTGTGATTGCTTCAAGTTCTGGCCAGTGTCTGT