Contig 009939:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016N03Sequence520007835 (2)ref|XP_009589985.1|5e-35PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic [Nicotiana tome704009939 (2)gb|AFK45504.1|8e-45unknown [Lotus japonicus]
JMSF035G04Sequence667007835 (2)ref|XP_009589985.1|7e-55PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic [Nicotiana tome771009939 (2)gb|AFK45504.1|2e-63unknown [Lotus japonicus]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035G04+ GATCCAGATTGTNTCAAAGAAGGTTTAATTGTATGGGNCNGCCAA
                      ____________________________________________________________
consensus GATCCAGATTGTNTCAAAGAAGGTTTAATTGTATGGGNCNGCCAA
 
. : . : . : . : . : . :
rJMSF035G04+ AGATAAAGGGATATCCAGGGGTAAGTTTGGATGCATTGGTTGGGATATTCACCCGCATTG
                      ____________________________________________________________
consensus AGATAAAGGGATATCCAGGGGTAAGTTTGGATGCATTGGTTGGGATATTCACCCGCATTG
 
. : . : . : . : . : . :
rJMSF035G04+ GCCCGTGAAGTAGAAGAAATTGGTGTTACAAATACCTTTTCTTTGGCTGAAAAAGTTGTA
                      ____________________________________________________________
consensus GCCCGTGAAGTAGAAGAAATTGGTGTTACAAATACCTTTTCTTTGGCTGAAAAAGTTGTA
 
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rJMSF035G04+ TATGCCATTGAGGAGGCTCGTCCTTTACTCAATCAGATCAAAGCCATGGCTGAAGATGTT
rJMSF016N03+ CTCGTCCTTTACTCAATCAGATCAAAGCCATGGCTGAAGATGTT
                      ____________________________________________________________
consensus TATGCCATTGAGGAGGCTCGTCCTTTACTCAATCAGATCAAAGCCATGGCTGAAGATGTT
 
. : . : . : . : . : . :
rJMSF035G04+ CAGCCTTTGTTGACTGAAGTCCGTAATAGTGGCTTATTGAGCGAAGTGGAGAGTTTGACA
rJMSF016N03+ CAGCCTTTGTTGACTGAAGTCCGTAATAGTGGCTTATTGAGCGAAGTGGAGAGTTTGACA
                      ____________________________________________________________
consensus CAGCCTTTGTTGACTGAAGTCCGTAATAGTGGCTTATTGAGCGAAGTGGAGAGTTTGACA
 
. : . : . : . : . : . :
rJMSF035G04+ AAAAGCTTGACACAAGCTTCTGAAGATCTGAGAAGAGTACATTCATCTGTAATGACTCCT
rJMSF016N03+ AAAAGCTTGACACAAGCTTCTGAAGATCTGAGAAGAGTACATTCATCTGTAATGACTCCT
                      ____________________________________________________________
consensus AAAAGCTTGACACAAGCTTCTGAAGATCTGAGAAGAGTACATTCATCTGTAATGACTCCT
 
. : . : . : . : . : . :
rJMSF035G04+ GAGAATACAGAACTAATAAGGAAGTCTGTATATACACTGGTTTTCACTTTGAAGAACATT
rJMSF016N03+ GAGAATACAGAACTAATAAGGAAGTCTGTATATACACTGGTTTTCACTTTGAAGAACATT
                      ____________________________________________________________
consensus GAGAATACAGAACTAATAAGGAAGTCTGTATATACACTGGTTTTCACTTTGAAGAACATT
 
. : . : . : . : . : . :
rJMSF035G04+ GAGAGTATAAGCTCCGACATATTAGGATTCACTGGTGATGAAGCGACCAGACGGAATCTA
rJMSF016N03+ GAGAGTATAAGCTCCGACATATTAGGATTCACTGGTGATGAAGCGACCAGACGGAATCTA
                      ____________________________________________________________
consensus GAGAGTATAAGCTCCGACATATTAGGATTCACTGGTGATGAAGCGACCAGACGGAATCTA
 
. : . : . : . : . : . :
rJMSF035G04+ AAATTGCTTATCAAGTCACTCAGCCGGCTACTGTGAAGATGGAAGACACCGAAAAGCTTA
rJMSF016N03+ AAATTGCTTATCAAGTCACTCAGCCGGCTACTGTGAAGATGGAAGACACCGAAAAGCTTA
                      ____________________________________________________________
consensus AAATTGCTTATCAAGTCACTCAGCCGGCTACTGTGAAGATGGAAGACACCGAAAAGCTTA
 
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rJMSF035G04+ GTCACATTCAATATTCAAATTGAGTGAATCCGAACTGCTTCTATAATCTTGAATGCAACA
rJMSF016N03+ GTCACATTCAATATTCAAATTGAGTGAATCCGAACTGCTTCTATAATCTTGAATGCAACA
                      ____________________________________________________________
consensus GTCACATTCAATATTCAAATTGAGTGAATCCGAACTGCTTCTATAATCTTGAATGCAACA
 
. : . : . : . : . : . :
rJMSF035G04+ GGCAGGCATTTGACATGGAGGCCAGTTTAGATCGCTGTTGGAGACACACGAGTTCTTTGG
rJMSF016N03+ GGCAGGCATTTGACATGGAGGCCAGTTTAGATCGCTGTTGGAGACACACGAGTTCTTTGG
                      ____________________________________________________________
consensus GGCAGGCATTTGACATGGAGGCCAGTTTAGATCGCTGTTGGAGACACACGAGTTCTTTGG
 
. : . : . : . : . : . :
rJMSF035G04+ GTAATTGTGCAAATCGTTTAGGTAGTTTGATCTTTTGTTAAGATAGAAGATGAACCTATA
rJMSF016N03+ GTAATTGTGCAAATCGTTTAGGTAGTTTGATCTTTTGTTAAGATAGAAGATGAACCTATA
                      ____________________________________________________________
consensus GTAATTGTGCAAATCGTTTAGGTAGTTTGATCTTTTGTTAAGATAGAAGATGAACCTATA
 
. : . : . : . : . : . :
rJMSF035G04+ TTCCTTGTATTCCCATTACTTTGCTTTGGTGAAAGCCTTCATAATGTCTCTTTCTTGTAT
rJMSF016N03+ TTCCTTGTATTCCCATTACTTTGCTTTGGTGAAAGCCTTCATAATGTCTCTTTCTTGTAT
                      ____________________________________________________________
consensus TTCCTTGTATTCCCATTACTTTGCTTTGGTGAAAGCCTTCATAATGTCTCTTTCTTGTAT
 
. : . : . : . : . : . :
rJMSF035G04+ TCAAAC
rJMSF016N03+ TCAAACTCCTGTCTGGGAATATGAGGAATAGTTCAGAGATTTTGGTTAGAAATATTACTT
                      ____________________________________________________________
consensus TCAAACTCCTGTCTGGGAATATGAGGAATAGTTCAGAGATTTTGGTTAGAAATATTACTT
 
. : . : . : . : . : . :
rJMSF016N03+ TGAACTGAAAGGATAGTTGTCCTTTGAAGCTTTTCATATTTTGAAATTGAGTCAAGACAA
                      ____________________________________________________________
consensus TGAACTGAAAGGATAGTTGTCCTTTGAAGCTTTTCATATTTTGAAATTGAGTCAAGACAA