| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF005B14 | Sequence | 252 | 004946 (3) | ref|XP_007023315.1| | 3e-06 | Leucine-rich repeat family protein isoform 2, partial [Theobroma cacao] gb|EOY2 | 340 | 009930 (3) | ref|XP_009611338.1| | 5e-05 | PREDICTED: F-box/LRR-repeat protein 13 isoform X1 [Nicotiana tomentosiformis] r |
| JMSF015H06 | Sequence | 552 | 004946 (3) | ref|XP_004235905.1| | 9e-52 | PREDICTED: putative adenylate cyclase regulatory protein [Solanum lycopersicum] | 739 | 009930 (3) | ref|XP_009796749.1| | 1e-33 | PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Nicotiana sylvestris] |
| JMSF043C20 | Sequence | 816 | 004946 (3) | ref|XP_009611340.1| | 1e-93 | PREDICTED: F-box/LRR-repeat protein 13 isoform X2 [Nicotiana tomentosiformis] | 838 | 009930 (3) | ref|XP_009796749.1| | 5e-46 | PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF043C20+ CTCGCAGGGTTAAGCCATTTGGAGAGTTTGAACCTGTCG
____________________________________________________________
consensus CTCGCAGGGTTAAGCCATTTGGAGAGTTTGAACCTGTCG
. : . : . : . : . : . :
rJMSF043C20+ TTCACTGTTATAACGGACAATGGGTTGAGAAAGTTAANGGGGGTTGTCATCACTGAGATC
____________________________________________________________
consensus TTCACTGTTATAACGGACAATGGGTTGAGAAAGTTAANGGGGGTTGTCATCACTGAGATC
. : . : . : . : . : . :
rJMSF043C20+ ACTTAATTTGGATGCTCGCCAGATTACTGATGCCGGACTTGCCGCTCTTACGAGTTTGAC
____________________________________________________________
consensus ACTTAATTTGGATGCTCGCCAGATTACTGATGCCGGACTTGCCGCTCTTACGAGTTTGAC
. : . : . : . : . : . :
rJMSF043C20+ TGGTTTAATGCATTTGGATCTCTTTGGAGCTCGTATTACTGATTCCGGGACAAACTATTT
rJMSF015H06+ ATTCCGGGACNAACTATTT
____________________________________________________________
consensus TGGTTTAATGCATTTGGATCTCTTTGGAGCTCGTATTACTGATTCCGGGACAAACTATTT
. : . : . : . : . : . :
rJMSF043C20+ AAAGCATTTCAAGAACCTGCGATCTCTGGAAATTTGCGGTGGAGGCTTGACTGATGCTGG
rJMSF015H06+ AAAGCATTTCAAGAACCTGCGATCTCTGGAAATTTGCGGTGGAGGCTTGACTGATGCTGG
____________________________________________________________
consensus AAAGCATTTCAAGAACCTGCGATCTCTGGAAATTTGCGGTGGAGGCTTGACTGATGCTGG
. : . : . : . : . : . :
rJMSF043C20+ CGTGAAAAACATCAAAGATCTTACGGCCCTCAATTTGCTAAATCTTTCACAGAACAGTCA
rJMSF015H06+ CGTGAAAAACATCAAAGATCTTACGGCCCTCAATTTGCTAAATCTTTCACAGAACAGTCA
____________________________________________________________
consensus CGTGAAAAACATCAAAGATCTTACGGCCCTCAATTTGCTAAATCTTTCACAGAACAGTCA
. : . : . : . : . : . :
rJMSF043C20+ CCTCACAGATAAAAGCTTGGAAGCAATTTCCGGGCTGACATCGCTGGTGTCTCTTAATGT
rJMSF015H06+ CCTCACAGATAAAAGCTTGGAAGCAATTTCCGGGCTGACATCGCTGGTGTCTCTTAATGT
____________________________________________________________
consensus CCTCACAGATAAAAGCTTGGAAGCAATTTCCGGGCTGACATCGCTGGTGTCTCTTAATGT
. : . : . : . : . : . :
rJMSF043C20+ ATCAAACTCTCGCATTACGAGTGCGGGGTTGCAACATCTGAAGCCACTCAAGAAACTGAA
rJMSF015H06+ ATCAAACTCTCGCATTACGAGTGCGGGGTTGCAACATCTGAAGCCACTCAAGAAACTGAA
____________________________________________________________
consensus ATCAAACTCTCGCATTACGAGTGCGGGGTTGCAACATCTGAAGCCACTCAAGAAACTGAA
. : . : . : . : . : . :
rJMSF005B14+ AAGGTGACTGCAAACGACATCAAGAAACTCCAGTCCAC
rJMSF043C20+ GTCGCTTACACTGGAGTCGTGTAAGGTGACTGCAAACGACATCAAGAAACTCCAGTCCAC
rJMSF015H06+ GTCGCTTACACTGGAGTCGTGTAAGGTGACTGCAAACGACATCAAGAAACTCCAGTCCAC
____________________________________________________________
consensus GTCGCTTACACTGGAGTCGTGTAAGGTGACTGCAAACGACATCAAGAAACTCCAGTCCAC
. : . : . : . : . : . :
rJMSF005B14+ CGACCTCCCGAATCTGGTGAATTATAGGCCCGAATGATACGTCAAGATGGGAACGTTAAA
rJMSF043C20+ CGACCTCCCGAATCTGGTGAATTATAGGCCCGAATGATACGTCAAGATGGGAACGTTAAA
rJMSF015H06+ CGACCTCCCGAATCTGGTGAATTATAGGCCCGAATGATACGTCAAGATGGGAACGTTAAA
____________________________________________________________
consensus CGACCTCCCGAATCTGGTGAATTATAGGCCCGAATGATACGTCAAGATGGGAACGTTAAA
. : . : . : . : . : . :
rJMSF005B14+ TTATCTGCTCAGCTCAGCATTGAGAAGCTGCTGTACATAGACCAGTAATAGTCTGTTCTG
rJMSF043C20+ TTATCTGCTCAGCTCAGCATTGAGAAGCTGCTGTACATAGACCAGTAATAGTCTGTTCTG
rJMSF015H06+ TTATCTGCTCAGCTCAGCATTGAGAAGCTGCTGTACATAGACCAGTAATAGTCTGTTCTG
____________________________________________________________
consensus TTATCTGCTCAGCTCAGCATTGAGAAGCTGCTGTACATAGACCAGTAATAGTCTGTTCTG
. : . : . : . : . : . :
rJMSF005B14+ TTCTGTTTGGTTCCATGCTGGATGTGAAGCTCTCTTTTGTATGGGAACTCATATGAAAAA
rJMSF043C20+ TTCTGTTTGGTTCCATGCTGGATGTGAAGCTCTCTTTTGTATGGGAACTCATATGAAAAA
rJMSF015H06+ TTCTGTTTGGTTCCATGCTGGATGTGAAGCTCTCTTTTGTATGGGAACTCATATGAAAAA
____________________________________________________________
consensus TTCTGTTTGGTTCCATGCTGGATGTGAAGCTCTCTTTTGTATGGGAACTCATATGAAAAA
. : . : . : . : . : . :
rJMSF005B14+ GAAGGTAGATAAAAGCTTCCATGGCATGGAGTATGGATTGCAGTCTCTCAACTCATCACT
rJMSF043C20+ GAAGGTAGATAAAAGCTTCCATGGCATGGAGTATGGATTGCAGTCTCTCAACTCATCACT
rJMSF015H06+ GAAGGTAGATAAAAGCTTCCATGGCATGGAGTATGGATTGCAGTCTCTCAACTCATCACT
____________________________________________________________
consensus GAAGGTAGATAAAAGCTTCCATGGCATGGAGTATGGATTGCAGTCTCTCAACTCATCACT
. : . : . : . : . : . :
rJMSF005B14+ ATTTCCCTCTGTACATATTTCCCATCATTATGGTATGATGTTTGCTGTTTATTAC
rJMSF043C20+ ATTTCCCTCTGTACATATTTCCCATCATTATGGTATGATGTTTGCTGTTTATTACTTGTG
rJMSF015H06+ ATTTCCCTCTGTACATATTTCCCATCATTATGGTATGATGTTTGCTGTTTATTACTTGTG
____________________________________________________________
consensus ATTTCCCTCTGTACATATTTCCCATCATTATGGTATGATGTTTGCTGTTTATTACTTGTG
. : . : . : . : . : . :
rJMSF043C20+ TTTTTAGCAAGTAAAAA
rJMSF015H06+ TTTTTAGCAAGTTAAAAATAATAACATGGAGTTGCTACTAGTAAAATTTTGTCAGTATCA
____________________________________________________________
consensus TTTTTAGCAAGTTAAAAATAATAACATGGAGTTGCTACTAGTAAAATTTTGTCAGTATCA
. : . : . : . : . : . :
rJMSF015H06+ TATGTTTACTTTATGCTTTTTGTCAGTATCTTGTATTTCTAACAAAACATAACATACAAC
____________________________________________________________
consensus TATGTTTACTTTATGCTTTTTGTCAGTATCTTGTATTTCTAACAAAACATAACATACAAC