Contig 009913:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-                                                               GAGGCCCC
rJMSF010F04+                                                              GAGGCCCC
                      ____________________________________________________________
consensus                                                                 GAGGCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-           TTCACATTCATTCCCAAATCCACCATTGTATTTCTAGCCTTCATCTTCTAAACCATTTCC
rJMSF010F04+          TTCACATTCATTCCCAAATCCACCATTGTATTTCTAGCCTTCATCTTCTAAACCATTTCC
                      ____________________________________________________________
consensus             TTCACATTCATTCCCAAATCCACCATTGTATTTCTAGCCTTCATCTTCTAAACCATTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-           CAGTTTTCTCACTCTCTGAACAACAGAAGAGAATATAATGTCCACTGTTCTCAAGATTAC
rJMSF010F04+          CAGTTTTCTCACTCTCTGAACAACNGAAGAGAATATAATGTCCACTGTTCTCAAGATTAC
                      ____________________________________________________________
consensus             CAGTTTTCTCACTCTCTGAACAACAGAAGAGAATATAATGTCCACTGTTCTCAAGATTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-           TCTTGATGGGCTAATGAGGTACAGGAAGAAGCAAAGTGATGGAGGCTATGAGTATGCTCC
rJMSF010F04+          TCTTGATGGNCTAATGAGGTACAGGAAGAAGCAAAGTGATGGAGGCTATGAGTATGCTCC
                      ____________________________________________________________
consensus             TCTTGATGGGCTAATGAGGTACAGGAAGAAGCAAAGTGATGGAGGCTATGAGTATGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-           TGCAGCCTCCTTGGAGGGCGACGATGATGACGATGGCGGCTATGATTATGCTCCAGCTGC
rJMSF010F04+          TGCAGCCTCCTTGGAGGGCGACGATGATGACGATGGCGGCTATGATTATGCTCCAGCTGC
                      ____________________________________________________________
consensus             TGCAGCCTCCTTGGAGGGCGACGATGATGACGATGGCGGCTATGATTATGCTCCAGCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-           ATGAAATATTTGTGTGTTTGGTGCACATTGTCACAAATCTGTGGGTATTATTAGAGAGAT
rJMSF010F04+          ATGAAATATTTGNGTGTTTGGTGCACATTGTCACAAATCTGTGGGTATTATTAGAGAGAT
                      ____________________________________________________________
consensus             ATGAAATATTTGTGTGTTTGGTGCACATTGTCACAAATCTGTGGGTATTATTAGAGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF010F04-           TTATTTACCCGATTGAGTTTTTCGTTAATAAATTTGATTTTTCTTGTAGTGAAGT     
rJMSF010F04+          TTATTTACCCGATTGAGTTTTTCGTTAATAAATTTGATTTTTCTTGTAGTGAAGTAGTAC
                      ____________________________________________________________
consensus             TTATTTACCCGATTGAGTTTTTCGTTAATAAATTTGATTTTTCTTGTAGTGAAGTAGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F04+          GTAGTTCAGTGAGGGGATAAGAGGAATGAGAGACTTGGGTACAAGCTANATGTAGTGTAT
                      ____________________________________________________________
consensus             GTAGTTCAGTGAGGGGATAAGAGGAATGAGAGACTTGGGTACAAGCTANATGTAGTGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F04+          TCAGGATAGCCAGTGGAAGTACTTTATTGNTTTAGTAATATTCACATGCAATATATATAA
                      ____________________________________________________________
consensus             TCAGGATAGCCAGTGGAAGTACTTTATTGNTTTAGTAATATTCACATGCAATATATATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F04+          TAGGTCTTTCTGTCATTAGTTGAAAGCTCTTGTTCTATCNGATGCCGTANTNTATTGTCA
                      ____________________________________________________________
consensus             TAGGTCTTTCTGTCATTAGTTGAAAGCTCTTGTTCTATCNGATGCCGTANTNTATTGTCA