Contig 009911:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010C19Sequence378008076 (8)ref|XP_008337466.1|3e-58PREDICTED: vacuolar protein sorting-associated protein 35A-like [Malus domestic715009911 (2)ref|XP_009793929.1|2e-62PREDICTED: vacuolar protein sorting-associated protein 35A-like [Nicotiana sylv
JMSF048N21Sequence632008076 (8)ref|XP_011099880.1|4e-117PREDICTED: vacuolar protein sorting-associated protein 35A isoform X2 [Sesamum 717009911 (2)ref|XP_009612578.1|1e-78PREDICTED: vacuolar protein sorting-associated protein 35A isoform X2 [Nicotian

Alignment

This contig is upended


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rJMSF048N21+                                                                 TTCTG
                      ____________________________________________________________
consensus                                                                    TTCTG
 
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rJMSF048N21+          CAAAGCTTTGAAGAAACCTGATCAGTGTAGAGCTGTCTATGCTTGTTCACATCTCTTCTG
                      ____________________________________________________________
consensus             CAAAGCTTTGAAGAAACCTGATCAGTGTAGAGCTGTCTATGCTTGTTCACATCTCTTCTG
 
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rJMSF048N21+          GGTCGAAGATCAGGATAACATCAAAGATGGAGAGAGGGTCTTGCTTTGCTTGAAGCGTGC
rJMSF010C19+               AAGATCAGGATAACATCAAAGATGGAGAGAGGGTCTTGCTTTGCTTGAAGCGTGC
                      ____________________________________________________________
consensus             GGTCGAAGATCAGGATAACATCAAAGATGGAGAGAGGGTCTTGCTTTGCTTGAAGCGTGC
 
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rJMSF048N21+          CTTAAGGATTGCAAATGCTGCTCAACAAATGTCCAGTGTAACCCGAGGCAGCAGTGGATC
rJMSF010C19+          CTTAAGGATTGCAAATGCTGCTCAACAAATGTCCAGTGTAACCCGAGGCAGCAGTGGATC
                      ____________________________________________________________
consensus             CTTAAGGATTGCAAATGCTGCTCAACAAATGTCCAGTGTAACCCGAGGCAGCAGTGGATC
 
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rJMSF048N21+          AGTCATACTTTTCATAGAAATTCTGAACAAGTATCTGTATTTCTTTGAGAAGGGGGTTTC
rJMSF010C19+          AGTCATACTTTTCATAGAAATTCTGAACAAGTATCTGTATTTCTTTGAGAAGGGGGTTTC
                      ____________________________________________________________
consensus             AGTCATACTTTTCATAGAAATTCTGAACAAGTATCTGTATTTCTTTGAGAAGGGGGTTTC
 
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rJMSF048N21+          GGAGGTTACTGTGGCTTCAATCCAGAGCCTGAATGAACTAATTACAACCGAAATGCATAG
rJMSF010C19+          GGAGGTTACTGTGGCTTCAATCCAGAGCCTGAATGAACTAATTACAACCGAAATGCATAG
                      ____________________________________________________________
consensus             GGAGGTTACTGTGGCTTCAATCCAGAGCCTGAATGAACTAATTACAACCGAAATGCATAG
 
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rJMSF048N21+          TGACAATACAACATCAGATCCGGCTGCAGATGCTTTCTTTGCAAGCACACTGCGATATAT
rJMSF010C19+          TGACAATACAACATCAGATCCGGCTGCAGATGCTTTCTTTGCAAGCACACTGCGATATAT
                      ____________________________________________________________
consensus             TGACAATACAACATCAGATCCGGCTGCAGATGCTTTCTTTGCAAGCACACTGCGATATAT
 
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rJMSF048N21+          CCAGTTCCAGAAGGATAAAGGCGGAGCTGTTGGTGAGAAATACGAGGCAATCAAGTCGTA
rJMSF010C19+          CCAGTTCCAGAAGGATAAAGGCGGAGCTGTTGGTGAGAAATACGAGGCAATCAAGTCGTA
                      ____________________________________________________________
consensus             CCAGTTCCAGAAGGATAAAGGCGGAGCTGTTGGTGAGAAATACGAGGCAATCAAGTCGTA
 
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rJMSF048N21+          ATTTAGATTGTTTGATCTCCATCCATCCACAATGTGCACTTTTGGGTCAGATAAGTGCTG
rJMSF010C19+          ATTTAGATTGTTTGATCTCCATCCATCCACAATGTGCACTTTTGGGTCAGATAAGTGCTG
                      ____________________________________________________________
consensus             ATTTAGATTGTTTGATCTCCATCCATCCACAATGTGCACTTTTGGGTCAGATAAGTGCTG
 
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rJMSF048N21+          TTCTTGTACTGCAACGGTGGAGATAGGTCTCGTGTTATTCAATGACAAAACGAATCAAAT
rJMSF010C19+          TTCTTGTACTGCAACGGTGGAGATAGGTCTCGTGTTATTCAATGACAAAACGAATCAAAT
                      ____________________________________________________________
consensus             TTCTTGTACTGCAACGGTGGAGATAGGTCTCGTGTTATTCAATGACAAAACGAATCAAAT
 
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rJMSF048N21+          GCAGCAGCATCTCAACACGTCTTTGGTGTTGTATACGAGTGAGTGTGGTCGAGAATTCCT
rJMSF010C19+          GCAGCAGCATCTCAACACGTCTTTGGTGTTGTATACGAGTGAGTGTGGTCGAGAATTCCT
                      ____________________________________________________________
consensus             GCAGCAGCATCTCAACACGTCTTTGGTGTTGTATACGAGTGAGTGTGGTCGAGAATTCCT
 
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rJMSF048N21+          GATTTTTTTGTAAGGTTCTGTATACTTCATTAAATTTCCCTAGGGAAGGTGTTGAACATT
rJMSF010C19+          GATTTTTTTGTAAGGTTCTGTATACTTCATTAAATTTCCCTAGGGAAGGTGTTGAACATT
                      ____________________________________________________________
consensus             GATTTTTTTGTAAGGTTCTGTATACTTCATTAAATTTCCCTAGGGAAGGTGTTGAACATT
 
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rJMSF048N21+          GTATTAGGTTCTTCTCTATCTTTTTTTCTCTTTTAAAGATTAGAC               
rJMSF010C19+          GTATTAGGTTCTTCTCTATCTTTTTTTCTCTTTTAAAGATTAGACTNGGAACTCTGATAT
                      ____________________________________________________________
consensus             GTATTAGGTTCTTCTCTATCTTTTTTTCTCTTTTAAAGATTAGACTNGGAACTCTGATAT
 
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rJMSF010C19+          TCTGACATTGAAATATAGTACAAAGTTTTGCAATGTACACTCTGATTGTGATGATGGTAT
                      ____________________________________________________________
consensus             TCTGACATTGAAATATAGTACAAAGTTTTGCAATGTACACTCTGATTGTGATGATGGTAT