Contig 009908:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009K01Sequence415000586 (4)749009908 (3)ref|XP_004232619.1|2e-70PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum] ref|XP_0
JMSF010K01Sequence532009908 (3)emb|CDP22267.1|5e-50unnamed protein product [Coffea canephora]
JMSF024C19Sequence645000586 (4)755009908 (3)ref|XP_006344273.1|2e-62PREDICTED: probable splicing factor 3A subunit 1-like isoform X1 [Solanum tuber

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+                      TAACATCCCACCTATGCCTGGGCAACATCTTATGGTAAATCGTCCTGC
rJMSF009K01+                                        TGGGCAACATCTTATGGTAAATCGTCCTGC
                      ____________________________________________________________
consensus                         TAACATCCCACCTATGCCTGGGCAACATCTTATGGTAAATCGTCCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          AATGCACCCGTCAATGTCCATGAATGCTCCTAACA-TTCTTTACCACCACCACCTGGGTC
rJMSF009K01+          AATGCACCCGTCAATGTCCATGAATGCTCCTAACATTTCTTTACCACCACCACCTGGGTC
                      ____________________________________________________________
consensus             AATGCACCCGTCAATGTCCATGAATGCTCCTAACATTTCTTTACCACCACCACCTGGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          TCAGTTTACACCTCTGGGTGTTCCTCGAGCCTTTGTTCCCCATCCCATGTCCCAGCCTGG
rJMSF009K01+          TCAGTTTACACCTCTGGGTGTTCCTCGAGCCTTTGTTCCCCATCCCATGTCCCAGCCTGG
                      ____________________________________________________________
consensus             TCAGTTTACACCTCTGGGTGTTCCTCGAGCCTTTGTTCCCCATCCCATGTCCCAGCCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          GATGACTATTGTCCCACCACCTCCAATGCCCCATGGAATGCCTCCACCACCTCCACCTGA
rJMSF010K01+                                                                  CTGA
rJMSF009K01+          GATGACTATTGTCCCACCACCTCCAATGCCCCATGGAATGCCTCCACCACCTCCACCTGA
                      ____________________________________________________________
consensus             GATGACTATTGTCCCACCACCTCCAATGCCCCATGGAATGCCTCCACCACCTCCACCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          GGAAGCTCCACCACTTCCAGAGGAACCAGAGCCTAAAAGGCAAAAGCTTGACGAGTCTGT
rJMSF010K01+          GGAAGCTCCACCACTTCCAGAGGAACCAGAGCCTAAAAGGCAAAAGCTTGACGAGTCTGT
rJMSF009K01+          GGAAGCTCCACCACTTCCAGAGGAACCAGAGCCTAAAAGGCAAAAGCTTGACGAGTCTGT
                      ____________________________________________________________
consensus             GGAAGCTCCACCACTTCCAGAGGAACCAGAGCCTAAAAGGCAAAAGCTTGACGAGTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          TCTCATTCCTGAAGACCAGTTCCTCGCTAAGCATTCAGGACCTGCCTGTATCAGCATTGC
rJMSF010K01+          TCTCATTCNNGAAGACCAGTTCCTCGCTAAGCATTCAGGACCTGCCTGTATCAGCATTGC
rJMSF009K01+          TCTCATTCCTGAAGACCAGTTCCTCGCTAAGCATTCAGGACCTGCCTGTATCAGCATTGC
                      ____________________________________________________________
consensus             TCTCATTCCTGAAGACCAGTTCCTCGCTAAGCATTCAGGACCTGCCTGTATCAGCATTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          TGTACCAAATGTTGATGAAGGAAATCTCAAAGGGCAAGTATTGGAGATCACAGTGCAATC
rJMSF010K01+          TGTACCAAATGNTGANGAAGGAAATCTCAAAGGGCAAGTATTGGAGATCACAGTGCAATC
rJMSF009K01+          TGTACCAAATGTTGATGAAGGAAATCTCAAAGGGCAAGTATTGGAGATCACAGTGCAATC
                      ____________________________________________________________
consensus             TGTACCAAATGTTGATGAAGGAAATCTCAAAGGGCAAGTATTGGAGATCACAGTGCAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          CTTGTCTGAAACTGTTGGCAGTTTGAAAGAGAAGATTTCTGGTGAGATCCAGCTGCCTGC
rJMSF010K01+          CTTGTCTGAAACTGTTGGCAGTTTGAAAGAGAAGATTTNTGGTGAGATCCAGCTGCCNGC
rJMSF009K01+          CTTGTCTGAAACTGTTGGCAGTTTGAAAGAGAAGATTTCTGGTGAGATCCAGCTGCCTGC
                      ____________________________________________________________
consensus             CTTGTCTGAAACTGTTGGCAGTTTGAAAGAGAAGATTTCTGGTGAGATCCAGCTGCCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          TAACAAACAGAAGCTGAGTGGAAAGGCTGGGTTTCTCAAGGACAATTTATCACTTGCATA
rJMSF010K01+          TAACAAACAGAAGCTGAGTGGAAAGGCTGGGTTTCTCAAGGACAATTTATCACTTGCATA
rJMSF009K01+          TAACAAACAGAAGCTGAGTGGAAAGGCTGGGTTTCTCAAGGACAATTTATCACTTGCATA
                      ____________________________________________________________
consensus             TAACAAACAGAAGCTGAGTGGAAAGGCTGGGTTTCTCAAGGACAATTTATCACTTGCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          TTACAATGTTGCACCAGGAGAAACACTCAATCTTTCACTTAGAGAACGTGGTGGCAGAAA
rJMSF010K01+          TTACAATGTTGCACCAGGAGAAACACTCAATCTNTCACTTAGAGAACGTGGTGGCAGAAA
rJMSF009K01+          TTACAATGTTGCACCAGGAGAAACACTCAATCTTTCACTTAGAGAACGTGGTGGCAGAAA
                      ____________________________________________________________
consensus             TTACAATGTTGCACCAGGAGAAACACTCAATCTTTCACTTAGAGAACGTGGTGGCAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          GAGATGAAGATTGTTAGTTGGCCAGGCCTTGGAAAGGTTCATATTGGAACTATGGTTGCC
rJMSF010K01+          GAGATGAAGATTGTTAGTTGGCCAGGCCTTGGAAAGGTTCATATTGGAACTATGGTTGCC
rJMSF009K01+          GAGATGAAGATTGTTAGTTGGCCAGGCCTTGGAAAGGTTCATATTGGAACTATGGTTGCC
                      ____________________________________________________________
consensus             GAGATGAAGATTGTTAGTTGGCCAGGCCTTGGAAAGGTTCATATTGGAACTATGGTTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          ATCAAAATCCTTCTTGGAATATCTAGGCTTCATTCTTTGTTATGTTAATTTTGAGATTTT
rJMSF010K01+          ATCAAAATCCTTCTTGGAATATCTAGGCTTCATTCTTNGTTATGTTAATTTTGAGATTTT
rJMSF009K01+          ATCAAAATCCTTCTTGGAATATCTAGGCTTCATTCTTTGTTATGTTAATTTTGAGATTTT
                      ____________________________________________________________
consensus             ATCAAAATCCTTCTTGGAATATCTAGGCTTCATTCTTTGTTATGTTAATTTTGAGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024C19+          A-TTGGTTGTGTACCTCTAATAGTACTTTTT                             
rJMSF010K01+          ANNTGGTTGTGTACCTCTAATAGTACTTTTT                             
rJMSF009K01+          A-TTGGTTGTGTACCTCTAATAGTACTTTTTCAAGCTTTGTTAACCCTTTTAAGGCTGAT
                      ____________________________________________________________
consensus             A-TTGGTTGTGTACCTCTAATAGTACTTTTTCAAGCTTTGTTAACCCTTTTAAGGCTGAT