Contig 009889:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004A14Sequence261009480 (13)ref|XP_010665065.1|6e-07PREDICTED: tryptophan aminotransferase-related protein 3-like [Vitis vinifera]381009889 (3)ref|XP_009765967.1|57.4PREDICTED: uncharacterized protein LOC104217421 [Nicotiana sylvestris]
JMSF004C16Sequence251009889 (3)361009889 (3)ref|XP_009765967.1|57.8PREDICTED: uncharacterized protein LOC104217421 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF004C16-                                          GAATAGTTCTTTCAACAACATTTCCAGTG
                      ____________________________________________________________
consensus                                            GAATAGTTCTTTCAACAACATTTCCAGTG
 
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JMSF004C16-           GCCTTCAGCCCTTCACTTTCTCCCCAGGCCAGCTTAGCTTGCTGCAAATTAATCATGGTA
                      ____________________________________________________________
consensus             GCCTTCAGCCCTTCACTTTCTCCCCAGGCCAGCTTAGCTTGCTGCAAATTAATCATGGTA
 
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JMSF004C16-           GCTACCCAGGTGGAACCAAATGGATGGCCATTTGGGCTTGAAAAGATGAACATATGGCTT
rJMSF004C16+                                                                    TT
rJMSF004A14+                                                                    TT
                      ____________________________________________________________
consensus             GCTACCCAGGTGGAACCAAATGGATGGCCATTTGGGCTTGAAAAGATGAACATATGGCTT
 
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JMSF004C16-           AGAGTGAATGATGCTCCTCATTCTCAAGTTGACACACTATCACTAGACCCTT-CCCCATT
rJMSF004C16+          AGAGTGAATGATGCTCCTCATTCTCAAGTTGACACACTATCACTAGACCCTT-CCCCATT
rJMSF004A14+          AGAGTGAATGATGCTCCTCATTCTCAAGTTGACACACTATCACTAGACCCTTCCCCCATT
                      ____________________________________________________________
consensus             AGAGTGAATGATGCTCCTCATTCTCAAGTTGACACACTATCACTAGACCCTT-CCCCATT
 
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JMSF004C16-           GTGTGTTGTTCACTCCCCAAGTTTATCCTCATTCTCCTCTTCC                 
rJMSF004C16+          GTGTGTTGTTCACTCCCCAAGTTTATCCTCATTCTCCTCTTCCAATCTTGATACTGAGGA
rJMSF004A14+          GTGTGTTGTTCACTCCCCAAGTTTATCCTCATTCTCCTCTTCCAATCTTGATACTGAGGN
                      ____________________________________________________________
consensus             GTGTGTTGTTCACTCCCCAAGTTTATCCTCATTCTCCTCTTCCAATCTTGATACTGAGGA
 
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rJMSF004C16+          CGACTAATTGGGATGAGACCCGAAGACAAGAGGAAGTTGTATTTTCCGAAAGCAATGCAG
rJMSF004A14+          CGACTAATTGGGATGAGACCNGAAGACAAGAGGAAGTTGTATTTTCCGAAAGCAATGCAG
                      ____________________________________________________________
consensus             CGACTAATTGGGATGAGACCCGAAGACAAGAGGAAGTTGTATTTTCCGAAAGCAATGCAG
 
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rJMSF004C16+          AGTGAGATGCGTGGAAAAAATGTTGTGAACAAAATATTGCAATTAGAGGTGTCAAATGGA
rJMSF004A14+          AGTGAGATGCGTGGAAAAAATGTTGTGAACAAAATATTGCAATTAGAGGTGTCAAATGGA
                      ____________________________________________________________
consensus             AGTGAGATGCGTGGAAAAAATGTTGTGAACAAAATATTGCAATTAGAGGTGTCAAATGGA
 
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rJMSF004C16+          CAAGATGGAAGAGAAATGGGACAATGGCTTTGTGTGCCACTGTTACACAATGCTTTAGAG
rJMSF004A14+          CAAGATGGAAGAGAAATGGGACAATGGCTTTGTGTGCCACTGTTACACAATGCNTTAGAG
                      ____________________________________________________________
consensus             CAAGATGGAAGAGAAATGGGACAATGGCTTTGTGTGCCACTGTTACACAATGCTTTAGAG
 
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rJMSF004C16+          AAAATTAGCCGTAGTAAAGGCAACAATTCAAAGTATAA                      
rJMSF004A14+          AAAATTAGCCGTAGTAAAGGCAACAATTCAAAGTATAAAATGTTTAACTGTNAAACTAAA
                      ____________________________________________________________
consensus             AAAATTAGCCGTAGTAAAGGCAACAATTCAAAGTATAAAATGTTTAACTGTNAAACTAAA