Contig 009876:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001I09Sequence437006253 (4)ref|XP_004289754.1|4e-11PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Fragaria vesc796009876 (2)ref|XP_009795445.1|1e-69PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Nicotiana syl
JMSF002D15Sequence770009876 (2)ref|XP_009795445.1|1e-68PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Nicotiana syl

Alignment

This contig is upended


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rJMSF001I09+                        AGGCCTCTATGCATNGAGAAGGATTGTATCTTACAATATNTTTNCA
                      ____________________________________________________________
consensus                           AGGCCTCTATGCATNGAGAAGGATTGTATCTTACAATATNTTTNCA
 
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rJMSF001I09+          CTAGAAATGAATTGAGGACAAAATGTGAGAATGGATGGGCCTCACTCTTGATATTTCCAG
                      ____________________________________________________________
consensus             CTAGAAATGAATTGAGGACAAAATGTGAGAATGGATGGGCCTCACTCTTGATATTTCCAG
 
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rJMSF001I09+          GCCTCTATGCATTGGAGAAGGATTGTTTCAGAGTTGTCCAAAGAGTACCCTGATGTGGAA
rJMSF002D15+                    ATTGGAGAAGGATTGTTTCAGAGTTGTCCAAAGAGTACCCTGATGTGGAA
                      ____________________________________________________________
consensus             GCCTCTATGCATTGGAGAAGGATTGTTTCAGAGTTGTCCAAAGAGTACCCTGATGTGGAA
 
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rJMSF001I09+          CTTTCACATATGTATGTGGACAAAGCTGCCATGCAGCTTGTTCGCAATCCAAAGCATTTT
rJMSF002D15+          CTTTCACATATGTATGTGGACAAAGCTGCCATGCAGCTTGTTCGCAATCCAAAGCAGTTT
                      ____________________________________________________________
consensus             CTTTCACATATGTATGTGGACAAAGCTGCCATGCAGCTTGTTCGCAATCCAAAGCATTTT
 
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rJMSF001I09+          GATACGATTGTAACAAACAATATATTTGGTGATATTCTATCTGATGAAGCTTCAATGATT
rJMSF002D15+          GATACGATTGTAACAAACAATATATTTGGTGATATTCTATCTGATGAAGCTTCAATGATT
                      ____________________________________________________________
consensus             GATACGATTGTAACAAACAATATATTTGGTGATATTCTATCTGATGAAGCTTCAATGATT
 
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rJMSF001I09+          ACTGGAAGTATTGGTATGCTTCCATCTGCCAGTGTTGGAGAATCGGGACCTGGACTGTTT
rJMSF002D15+          ACTGGAAGTATTGGTATGCTTCCATCTGCCAGTGTTGGAGAATCGGGACCTGGACTGTTT
                      ____________________________________________________________
consensus             ACTGGAAGTATTGGTATGCTTCCATCTGCCAGTGTTGGAGAATCGGGACCTGGACTGTTT
 
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rJMSF001I09+          GAACCAATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAAGCAAATCCTTTAGCA
rJMSF002D15+          GAACCAATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAAGCAAATCCTTTAGCA
                      ____________________________________________________________
consensus             GAACCAATACATGGTTCTGCTCCTGATATTGCTGGACAGGATAAAGCAAATCCTTTAGCA
 
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rJMSF001I09+          ACAGTGCTTAGTGCTGCTATGCTTCTCAAATATGGCCTAGGAGATTGAGGCAGCTGTTTT
rJMSF002D15+          ACAGTGCTTAGTGCTGCTATGCTTCTCAAATATGGCCTAGGAGATTGAGGCAGCTGTTTT
                      ____________________________________________________________
consensus             ACAGTGCTTAGTGCTGCTATGCTTCTCAAATATGGCCTAGGAGATTGAGGCAGCTGTTTT
 
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rJMSF001I09+          GGACACTTTAAATCAAGGGTTTCGCACTGGTGACATATATTCTGTTGAGCATAAATTAGT
rJMSF002D15+          GGACACTTTAAATCAAGGGTTTCGCACTGGTGACATATATTCTGTTGAGCATAAATTAGT
                      ____________________________________________________________
consensus             GGACACTTTAAATCAAGGGTTTCGCACTGGTGACATATATTCTGTTGAGCATAAATTAGT
 
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rJMSF001I09+          GGGGTGCAAGGAAATGGGTGAACAAGTGTTGAAGTCAATAGAAGGAGGGCAAGTGGGCTG
rJMSF002D15+          GGGGTGCAAGGAAATGGGTGAACAAGTGTTGAAGTCAATAGAAGGAGGGCAAGTGGGCTG
                      ____________________________________________________________
consensus             GGGGTGCAAGGAAATGGGTGAACAAGTGTTGAAGTCAATAGAAGGAGGGCAAGTGGGCTG
 
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rJMSF001I09+          ATCATGAACGAGCTTCTTAATTCAAGGAGGTGGACGCTTTTTTGAAGGGAGCATGGGGGT
rJMSF002D15+          ATCATGAACGAGCTTCTTAATTCAAGGAGGTGGACGCTTTTTTGAAGGGAGCATGGGGGT
                      ____________________________________________________________
consensus             ATCATGAACGAGCTTCTTAATTCAAGGAGGTGGACGCTTTTTTGAAGGGAGCATGGGGGT
 
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rJMSF001I09+          ATACAAAGCCGCTAATTGTACACTTTGTTTGAGGCATTTCTGTAGGGGCTGCTCTTCAGC
rJMSF002D15+          ATACAAAGCCGCTAATTGTACACTTTGTTTGAGGCATTTCTGTAGGGGCTGCTCTTCAGC
                      ____________________________________________________________
consensus             ATACAAAGCCGCTAATTGTACACTTTGTTTGAGGCATTTCTGTAGGGGCTGCTCTTCAGC
 
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rJMSF001I09+          TTACCTACAGCATATTTCTAGAGCGCTTCATGCCTAGTTTTAACCTATTTAGTATTCTTG
rJMSF002D15+          TTACCTACAGCATATTTCTAGAGCGCTTCATGCCTAGTTTTAACCTATTTAGTATTCTTG
                      ____________________________________________________________
consensus             TTACCTACAGCATATTTCTAGAGCGCTTCATGCCTAGTTTTAACCTATTTAGTATTCTTG
 
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rJMSF001I09+          GTTATTACTGTAACTTTGAGCCTATTCAAT                              
rJMSF002D15+          GTTATTACTGTAACTTTGAGCCTATTCAATTGTATTCTTGGTTATTACTGTAACTTTGAG
                      ____________________________________________________________
consensus             GTTATTACTGTAACTTTGAGCCTATTCAATTGTATTCTTGGTTATTACTGTAACTTTGAG
 
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rJMSF002D15+          CCTTCAATTGTATATTTCCAATTGTACGTTTTCTTTCTTTTTCATTTTTACTCAAGTCTT
                      ____________________________________________________________
consensus             CCTTCAATTGTATATTTCCAATTGTACGTTTTCTTTCTTTTTCATTTTTACTCAAGTCTT