Contig 009859:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039B10Sequence436001945 (6)ref|XP_010110030.1|1e-12Mitogen-activated protein kinase-NTF3-like protein [Morus notabilis] gb|AHJ80966586009859 (3)emb|CDP03486.1|4e-48unnamed protein product [Coffea canephora]
JMFF050M07Sequence633001945 (6)ref|XP_010110030.1|2e-56Mitogen-activated protein kinase-NTF3-like protein [Morus notabilis] gb|AHJ80966566009859 (3)ref|XP_011074575.1|3e-31PREDICTED: mitogen-activated protein kinase homolog NTF3 [Sesamum indicum]
JMSF017M12Sequence254001945 (6)ref|XP_010110030.1|8e-28Mitogen-activated protein kinase-NTF3-like protein [Morus notabilis] gb|AHJ80966601009859 (3)sp|Q40884.1|MPK_PETHY8e-40RecName: Full=Mitogen-activated protein kinase homolog 1; AltName: Full=PMEK1 [

Alignment

This contig is upended


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rJMSF017M12+                                ATNTTGAATTCATCGACANCCCCAAGGCAAAGAAGTAC
                      ____________________________________________________________
consensus                                   ATNTTGAATTCATCGACANCCCCAAGGCAAAGAAGTAC
 
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rJMSF017M12+          ATCAAATCCCTTCCATACTCTCCCAAAACGCCCTTTTCCCGCCTNTACCCCAACGCCCAT
rJMFF039B10+                               CCCAAAACGCCCTTTTCCCGCCTNTACCCCAACGCCCAT
                      ____________________________________________________________
consensus             ATCAAATCCCTTCCATACTCTCCCAAAACGCCCTTTTCCCGCCTNTACCCCAACGCCCAT
 
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rJMSF017M12+          CNCATGGCAATCGACNTGCNGCAGAAGATGNTCGTGTTCGACCCTTCAAAGAGAATCAGT
rJMFF039B10+          CCCATGGCAATCGACCTGCTGCAGAAGATGCTCGTGTTCGACCCTTCAAAGAGAATCAGT
rJMFF050M07+                                            TGTTCGACCCTTCAAAGAGAATCAGT
                      ____________________________________________________________
consensus             CCCATGGCAATCGACCTGCTGCAGAAGATGCTCGTGTTCGACCCTTCAAAGAGAATCAGT
 
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rJMSF017M12+          GTCACNGAGGCANTTCAACACCCGTACATGTCCTTTCTGTACGACCCCAACAGNGNCCCG
rJMFF039B10+          GTCACCGAGGCACTTCAACACCCGTACATGTCCTCTCTGTACGACCCCAACAGCGGCCCG
rJMFF050M07+          GTCACCGAGGCACTTCAACACCCGTACATGTCCTCTCTGTACGACCCCAACAGCGGCCCG
                      ____________________________________________________________
consensus             GTCACCGAGGCACTTCAACACCCGTACATGTCCTCTCTGTACGACCCCAACAGCGGCCCG
 
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rJMSF017M12+          CCAGCTCAGGTCCCGATCAACCTTGACATAGACGAGGNTNTCGGGGAAGAAATGATCAGA
rJMFF039B10+          CCAGCTCAGGTCCCGATCAACCTTGACATAGACGAGGATCTCGGGGAAGAAATGATCAGA
rJMFF050M07+          CCAGCTCAGGTCCCGATCAACCTTGACATAGACGAGGATCTCGGGGAAGAAATGATCAGA
                      ____________________________________________________________
consensus             CCAGCTCAGGTCCCGATCAACCTTGACATAGACGAGGATCTCGGGGAAGAAATGATCAGA
 
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rJMSF017M12+          GAAATGATGNGGACGGAGATCCTTCATTNCCACCCCCAAGCAGCAGCAGCCATAACCAAC
rJMFF039B10+          GAAATGATGTGGACGGAGATCCTTCATTACCACCCCCAAGCAGCAGCAGCCATAACCAAC
rJMFF050M07+          GAAATGATGTGGACGGAGATCCTTCATTACCACCCCCAAGCAGCAGCAGCCATAACCAAC
                      ____________________________________________________________
consensus             GAAATGATGTGGACGGAGATCCTTCATTACCACCCCCAAGCAGCAGCAGCCATAACCAAC
 
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rJMSF017M12+          ATGCAGCTNGACNTAGNTGCCCCNCAAGCTTGATCACAACAAAAGCAGTGAGTCCCGAGA
rJMFF039B10+          ATGCAGCTCGACCTAGCTGCCCCACAAGCTTGATCACAACAAAAGCAGTGAGTCCCGAGA
rJMFF050M07+          ATGCAGCTCGACCTAGCTGCCCCACAAGCTTGATCACAACAAAAGCAGTGAGTCCCGAGA
                      ____________________________________________________________
consensus             ATGCAGCTCGACCTAGCTGCCCCACAAGCTTGATCACAACAAAAGCAGTGAGTCCCGAGA
 
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rJMSF017M12+          GGNGGTTAGTTGTNTCCTCGAAGCTNGATCAACCCCTCCCCAATCTATCATTGTTGTTGT
rJMFF039B10+          GGTGGTTAGTTGTCTCCTCGAAGCTCGATCAACCCCTCCCCAATCTATCATTGTTGTTGT
rJMFF050M07+          GGTGGTTAGTTGTCTCCTCGAAGCTCGATCAACCCCTCCCCAATCTATCATTGTTGTTGT
                      ____________________________________________________________
consensus             GGTGGTTAGTTGTCTCCTCGAAGCTCGATCAACCCCTCCCCAATCTATCATTGTTGTTGT
 
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rJMSF017M12+          ATGTTCCCTTTTTCCCAGATCTCAATAAACCTNTTATAAAACTGCATTAACAGTTGGAAC
rJMFF039B10+          ATGTTCCCTTTTTCCCAGATCTCAATAAACCTCTTATAAAACTGCATTAACAGTTGGAAC
rJMFF050M07+          ATGTTCCCTTTTTCCCAGATCTCAATAAACCTCTTATAAAACTGCATTAACAGTTGGAAC
                      ____________________________________________________________
consensus             ATGTTCCCTTTTTCCCAGATCTCAATAAACCTCTTATAAAACTGCATTAACAGTTGGAAC
 
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rJMSF017M12+          TGTAAACTGTAATTTATGCATGTAAGACCTTCACCAGACCCATATCATGTTGAGCTTCTT
rJMFF039B10+          TCTAAACTGTAATTTATGCATGTAAGACCTTCACCAGACCCATATCATGTTGAGCTTCTT
rJMFF050M07+          TGTAAACTGTAATTTATGCATGTAAGACCTTCACCAGACCCATATCATGTTGAGCTTCTT
                      ____________________________________________________________
consensus             TGTAAACTGTAATTTATGCATGTAAGACCTTCACCAGACCCATATCATGTTGAGCTTCTT
 
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rJMSF017M12+          TAACTTATAGTCTTGTACAGAGT                                     
rJMFF039B10+          TAACTTATAGTCTTGTACAGAGTTG-TTTTTTTTTATTTTTTTCTTTTCCCATCTTAATA
rJMFF050M07+          TAACTTATAGTCTTGTACAGAGTTGTTTTTTTTTTATTTTTTTCTTTTCCCATCTTAATA
                      ____________________________________________________________
consensus             TAACTTATAGTCTTGTACAGAGTTGTTTTTTTTTTATTTTTTTCTTTTCCCATCTTAATA
 
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rJMFF039B10+          AGAACATC                                                    
rJMFF050M07+          AGAACATCCATCTTCATGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AGAACATCCATCTTCATGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG