clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF039I21 | Sequence | 268 | 002148 (5) | gb|ACB37380.1| | 3e-05 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 666 | 009846 (3) | gb|ACB37380.1| | 1e-99 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] |
JMFF049G07 | Sequence | 425 | 002148 (5) | gb|ACB37380.1| | 5e-62 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 318 | 009846 (3) | ref|NP_001268176.1| | 6e-24 | 5-enolpyruvylshikimate-3-phosphate synthase [Vitis vinifera] emb|CBI38903.3| unn |
JMSF032M23 | Sequence | 651 | 002148 (5) | gb|ACB37380.1| | 1e-98 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 584 | 009846 (3) | ref|NP_001268176.1| | 3e-85 | 5-enolpyruvylshikimate-3-phosphate synthase [Vitis vinifera] emb|CBI38903.3| unn |
This contig is upended
. : . : . : . : . : . :
rJMFF039I21+ CTCGAGAAGATGGGAGCCGAAGTTTTGTGGACAGAGAACAGTG
____________________________________________________________
consensus CTCGAGAAGATGGGAGCCGAAGTTTTGTGGACAGAGAACAGTG
. : . : . : . : . : . :
rJMSF032M23+ CCTTCGGGAAGGAAACACTTACGTGCCATTGACG
rJMFF039I21+ TTNCCGTGAAAGGACCACCACGGGCACCTTCGGGAAGGAAACACTTACGTGCCATNGACG
____________________________________________________________
consensus TTNCCGTGAAAGGACCACCACGGGCACCTTCGGGAAGGAAACACTTACGTGCCATTGACG
. : . : . : . : . : . :
rJMSF032M23+ TGAACATGAATAAAATGCCCGATGTTGCCATGACTCTTGCTGTAGTTGCGCTATTTGCTG
rJMFF039I21+ TGAACATGAATAAAATGCCCGATGTTGCCATGACTCTTGCTGTAGTTGCGCTATTTGCTG
____________________________________________________________
consensus TGAACATGAATAAAATGCCCGATGTTGCCATGACTCTTGCTGTAGTTGCGCTATTTGCTG
. : . : . : . : . : . :
rJMSF032M23+ ATGGCCCGACAGCCATAAGAGACGTTGCTAGCTGGAGAGTTAAGGAAACCGAACGGATGA
rJMFF039I21+ ATGGCCCGACAGCCATAAGAGACGTTGCTAGCTGGAGAGTTAAGGAAACCGAACGGATGA
____________________________________________________________
consensus ATGGCCCGACAGCCATAAGAGACGTTGCTAGCTGGAGAGTTAAGGAAACCGAACGGATGA
. : . : . : . : . : . :
rJMSF032M23+ TTGCTATATGCACAGAACTTAGAAAGCTGGGAGCGACGGTCGAGGAAGGGCCAGACTACT
rJMFF039I21+ TTGCTATATGCACAGAACTTAGAAAGCTGGGAGCGACGGTCGAGGAAGGGCCAGACTACT
____________________________________________________________
consensus TTGCTATATGCACAGAACTTAGAAAGCTGGGAGCGACGGTCGAGGAAGGGCCAGACTACT
. : . : . : . : . : . :
rJMSF032M23+ GTATAATCACTCCACCCGAGAAACTAAACGTGACGGAAATCGACACATACGACGATCACA
rJMFF039I21+ GTATAATCACTCCACCCGAGAAACTAAACGTGACGGAAATCGACACATACGACGATCACA
rJMFF049G07+ ACACATACGACGATCACA
____________________________________________________________
consensus GTATAATCACTCCACCCGAGAAACTAAACGTGACGGAAATCGACACATACGACGATCACA
. : . : . : . : . : . :
rJMSF032M23+ GAATGGCCATGGCGTTTTCTCTTGCTGCTTGTGCCGAGGTACCAGTCACCATTAAAGATC
rJMFF039I21+ GAATGGCCATGGCGTTTTCTCTTGCTGCTTGTGCCGAGGTACCAGTCACCATTAAAGATC
rJMFF049G07+ GAATGGCCATGGCGTTTTCTCTTGCTGCTTGTGCCGAGGTACCAGTCACCATTAAAGATC
____________________________________________________________
consensus GAATGGCCATGGCGTTTTCTCTTGCTGCTTGTGCCGAGGTACCAGTCACCATTAAAGATC
. : . : . : . : . : . :
rJMSF032M23+ CTGGCTGTACTCGCAAGACTTTCCCAGATTATTTTGAGGTTCTTCAGAGGTTTTCTAAGC
rJMFF039I21+ CTGGCTGTACTCGCAAGACTTTCCCAGATTATTTTGAGGTTCTTCAGAGGTTTTCTAAGC
rJMFF049G07+ CTGGCTGTACCCGCAAGACTTTCCCAGATTATTTTGAGGTTCTTCAGAGGTTTTCTAAGC
____________________________________________________________
consensus CTGGCTGTACTCGCAAGACTTTCCCAGATTATTTTGAGGTTCTTCAGAGGTTTTCTAAGC
. : . : . : . : . : . :
rJMSF032M23+ ATTAAAAAGGTTTCCTTTACATCCATTTTGGAAGGTAGAGATCTGTGTTAGTTGAAAGAG
rJMFF039I21+ ATTAAAAAGGTTTCCTTTACATCCATTTTGGAAGGTAGAGATCTGTGTTAGTTGAAAGAG
rJMFF049G07+ ATTAAAAAGGTTTCCTTTACATCCATTTTGGAAGGTAGAGATCTGTGTTAGTTGAAAGAG
____________________________________________________________
consensus ATTAAAAAGGTTTCCTTTACATCCATTTTGGAAGGTAGAGATCTGTGTTAGTTGAAAGAG
. : . : . : . : . : . :
rJMSF032M23+ CTACTCCCAACTACCATGTTCCTCTTAGTTAAGGTT
rJMFF039I21+ CTACTCCCAACTACCATGTTCCTCTTAGTTAAGGTT
rJMFF049G07+ CTACTCCCAACTACCATGTTCCTCTTAGTTAAGGTTGAACTGGTTTTCATTTGCAAATAT
____________________________________________________________
consensus CTACTCCCAACTACCATGTTCCTCTTAGTTAAGGTTGAACTGGTTTTCATTTGCAAATAT
. : . : . : . : . : . :
rJMFF049G07+ AAACACGTTAAACATCAAGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus AAACACGTTAAACATCAAGAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG