Contig 009831:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004O16Sequence324000300 (22)dbj|BAJ53182.1|2e-47JHL18I08.16 [Jatropha curcas]741009831 (4)gb|ABG20629.1|2e-94DEF [Cestrum elegans]
JMFF035E09Sequence529000300 (22)gb|ADI58370.1|4e-89PAP3 [Capsicum annuum]670009831 (4)gb|ABG20629.1|2e-78DEF [Cestrum elegans]
JMFF039G08Sequence693009831 (4)gb|ABG20629.1|1e-97DEF [Cestrum elegans]
JMFF048E06Sequence402000300 (22)ref|XP_009794650.1|4e-65PREDICTED: floral homeotic protein PMADS 1 [Nicotiana sylvestris] emb|CAA65288.1220009831 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF039G08+ GCTAAGGT
                      ____________________________________________________________
consensus GCTAAGGT
 
. : . : . : . : . : . :
rJMFF004O16+ CCATCGTCATGATCTCCACTTCTGGCAAGCTCCATGAATACATCAGCCCCTCTACCAC
rJMFF039G08+ TTCCATCGTCATGATCTCCACTTCTGGCAAGCTCCATGAATACATCAGCCCCTCTACCAC
                      ____________________________________________________________
consensus TTCCATCGTCATGATCTCCACTTCTGGCAAGCTCCATGAATACATCAGCCCCTCTACCAC
 
. : . : . : . : . : . :
rJMFF004O16+ TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
rJMFF035E09+ TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
rJMFF039G08+ TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
                      ____________________________________________________________
consensus TACAAAGCAGTTGTTCGATCAGTACCAGAAGACTGTCGGGGTTGATCTATGGAGCTCCCA
 
. : . : . : . : . : . :
rJMFF004O16+ CTTTGAAAAAATGCAAGAGCAGCTCAAGAAACTGAGAGATGTTAACAGGGCTCTTCGAAG
rJMFF035E09+ CTTTGAAAAAATGCAAGAGCAGCTCAAGAATCTGAGAGATGTTAACAGGGCTCTTCGAAG
rJMFF039G08+ CTTTGAAAAAATGCAAGAGCAGCTCAAGAAACTGAGAGATGTTAACAGGGCTCTTCGAAG
                      ____________________________________________________________
consensus CTTTGAAAAAATGCAAGAGCAGCTCAAGAAACTGAGAGATGTTAACAGGGCTCTTCGAAG
 
. : . : . : . : . : . :
rJMFF004O16+ GGAGATCAGACAAAGGATGGGTGAGAGTCTGAACGATCTGAGCTTTGAACAATTGACTGA
rJMFF035E09+ GGAGATCAGACAAAGGATGGNTGAGAGTNTGAACGATCTGAGCTTTGAACAATTGACTGA
rJMFF039G08+ GGAGATCAGACAAAGGATGGGTGAGAGTCTGAACGATCTGAGCTTTGAACAATTGACTGA
                      ____________________________________________________________
consensus GGAGATCAGACAAAGGATGGGTGAGAGTCTGAACGATCTGAGCTTTGAACAATTGACTGA
 
. : . : . : . : . : . :
rJMFF004O16+ GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
rJMFF035E09+ GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
rJMFF039G08+ GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
                      ____________________________________________________________
consensus GCTCATAGAAGATGTTGACAATTCTATCAAGCTTATTCGTGAAAGAAAGTATAAGGTGAT
 
. : . : . : . : . : . :
rJMFF004O16+ TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
rJMFF035E09+ TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
rJMFF039G08+ TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
                      ____________________________________________________________
consensus TGGCAATCAGATTGAGACTCACAAGAAGAAGGTGAGGAATGTGGAAGAAATCCACAGAAA
 
. : . : . : . : . : . :
rJMFF004O16+ TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGTTGATCATGAAGG
rJMFF035E09+ TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGNTGATCATGAAGG
rJMFF039G08+ TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGTTGATCATGAAGG
                      ____________________________________________________________
consensus TCTGCTACTGGAATGTGAGGCAAGGCAAGAAGATCCATATGGCTTGGTTGATCATGAAGG
 
. : . : . : . : . : . :
rJMFF004O16+ GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
rJMFF035E09+ GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
rJMFF039G08+ GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
                      ____________________________________________________________
consensus GGATTATAATTCTGTTCTTGGATTTGCAAATGGAGGCCACCGCATATTAGCTTTGCGCTT
 
. : . : . : . : . : . :
rJMFF004O16+ GCAACCAGA
rJMFF035E09+ GCAACCAGA
rJMFF039G08+ GCAACCAGATCATCACCACCACCATCATCACGGTCACCTTCACAGTGGAGGGGGATCTGA
rJMFF048E06+ ACCATCATCACGGTCACCTTCACAGTGGAGGGGGATCTGA
                      ____________________________________________________________
consensus GCAACCAGATCATCACCACCACCATCATCACGGTCACCTTCACAGTGGAGGGGGATCTGA
 
. : . : . : . : . : . :
rJMFF039G08+ TCTCACTACATTTACTTTATTGGAGTAGTATGTACTTAATATTTCTGATCAGTTTAACAT
rJMFF048E06+ TCTCACTACATTTACTTTATTGGAGTAGTATGTACTTAATATTTCTGATCAGTTTAACAT
                      ____________________________________________________________
consensus TCTCACTACATTTACTTTATTGGAGTAGTATGTACTTAATATTTCTGATCAGTTTAACAT
 
. : . : . : . : . : . :
rJMFF039G08+ TTTACATGTTAAACTGTAGTAATTTTTCTAATGTATGAACCACTACTCAAACTAACAATA
rJMFF048E06+ TTTACATGTTAAACTGTAGTAATTTTTCTAATGTATGAACCACTACTCAAACTAACAATA
                      ____________________________________________________________
consensus TTTACATGTTAAACTGTAGTAATTTTTCTAATGTATGAACCACTACTCAAACTAACAATA
 
. : . : . : . : . : . :
rJMFF039G08+ AGGTTTGGTTTGCCTAGAATCGGAT
rJMFF048E06+ AGGTTTGGTTTGCCTAGAATCGGATTGATGTGGTCCGATATGTGTTGTATAAATCAAAAC
                      ____________________________________________________________
consensus AGGTTTGGTTTGCCTAGAATCGGATTGATGTGGTCCGATATGTGTTGTATAAATCAAAAC