Contig 009822:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047B08Sequence486000262 (2)550009822 (2)gb|KDP23840.1|1e-54hypothetical protein JCGZ_27129 [Jatropha curcas]
JMSF047P11Sequence684000262 (2)ref|XP_009627604.1|2e-19PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic [Nicotiana721009822 (2)ref|XP_010313054.1|341PREDICTED: phytochromobilin synthase isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047P11+ TTGTGCGAACTTTTTTACAACTGCCAAAATGAACATAA
                      ____________________________________________________________
consensus TTGTGCGAACTTTTTTACAACTGCCAAAATGAACATAA
 
. : . : . : . : . : . :
rJMSF047P11+ TCGTACTTGATCTTAACCCTTTGCATGATGTCATCAATCAAATAGATTACAAGGAGAAGT
                      ____________________________________________________________
consensus TCGTACTTGATCTTAACCCTTTGCATGATGTCATCAATCAAATAGATTACAAGGAGAAGT
 
. : . : . : . : . : . :
rJMSF047P11+ ATTACAAGCACCTTTTTCCTCTTGGCCTTAAGTATTCTCAGCTTTTACCCTGGGGAGGAA
                      ____________________________________________________________
consensus ATTACAAGCACCTTTTTCCTCTTGGCCTTAAGTATTCTCAGCTTTTACCCTGGGGAGGAA
 
. : . : . : . : . : . :
rJMSF047P11+ AACTTACCAGTGAGTCATTAAGATTTTTCTCTCCTATAGTTTTATGGACAAAATTTTCCT
                      ____________________________________________________________
consensus AACTTACCAGTGAGTCATTAAGATTTTTCTCTCCTATAGTTTTATGGACAAAATTTTCCT
 
. : . : . : . : . : . :
rJMSF047P11+ CTGGTCCTCACAACCATAGCATTTTGTATTCTGCGTTCAAGGATTACTTTAAGGCATGGC
rJMFF047B08+ TAAGGCATGGC
                      ____________________________________________________________
consensus CTGGTCCTCACAACCATAGCATTTTGTATTCTGCGTTCAAGGATTACTTTAAGGCATGGC
 
. : . : . : . : . : . :
rJMSF047P11+ TAAATCTGATTGACACAGCAGTGGAGGACACTGATGCTTCTCAAATCATTTGCAATCGTG
rJMFF047B08+ TAAATCTGATTGACACAGCAGTGGAGGACACTGATGCTTCTCAAATCATTTGCAATCGTG
                      ____________________________________________________________
consensus TAAATCTGATTGACACAGCAGTGGAGGACACTGATGCTTCTCAAATCATTTGCAATCGTG
 
. : . : . : . : . : . :
rJMSF047P11+ AAGCACAGCACAGGTACCTGACATGGAGGGCAGAAAAGGATCCTGGGCACGGACTTCTGA
rJMFF047B08+ AAGCACAGCACAGGTACCTGACATGGAGGGCAGAAAAGGATCCTGGGCACGGACTTCTGA
                      ____________________________________________________________
consensus AAGCACAGCACAGGTACCTGACATGGAGGGCAGAAAAGGATCCTGGGCACGGACTTCTGA
 
. : . : . : . : . : . :
rJMSF047P11+ AACGACTGATAGGAGAGACTCTTGCCAAGGAGCTGACTATGAACTTCCTCTTCAACGGCA
rJMFF047B08+ AACGACTGATAGGAGAGACTCTTGCCAAGGAGCTGACTATGAACTTCCTCTTCAACGGCA
                      ____________________________________________________________
consensus AACGACTGATAGGAGAGACTCTTGCCAAGGAGCTGACTATGAACTTCCTCTTCAACGGCA
 
. : . : . : . : . : . :
rJMSF047P11+ CTGGTGAGCTAGGGAGCAAAAGTTTTCTGGATTACTTTCCAGAGTACAAACGCGAAGATG
rJMFF047B08+ CTGGTGAGCTAGGGAGCAAAAGTTTTCTGGATTACTTTCCAGAGTACAAACGCGAAGATG
                      ____________________________________________________________
consensus CTGGTGAGCTAGGGAGCAAAAGTTTTCTGGATTACTTTCCAGAGTACAAACGCGAAGATG
 
. : . : . : . : . : . :
rJMSF047P11+ GAGGCATAAACGAGAAGCGAAGTATGGTTGGAAAGTCTTTTGAAAATCGGCCATGGGATG
rJMFF047B08+ GAGGCATAAACGAGAAGCGAAGTATGGTTGGAAAGTCTTTTGAAAATCGGCCATGGGATG
                      ____________________________________________________________
consensus GAGGCATAAACGAGAAGCGAAGTATGGTTGGAAAGTCTTTTGAAAATCGGCCATGGGATG
 
. : . : . : . : . : . :
rJMSF047P11+ CGGAAGGAAATTTCATCGGTGATACACCTCAACACAATTCATCACTCTCAAATTTAGATC
rJMFF047B08+ CGGAAGGAAATTTCATCGGTGATACACCTCAACACAATTCATCACTCTCAAATTTAGATC
                      ____________________________________________________________
consensus CGGAAGGAAATTTCATCGGTGATACACCTCAACACAATTCATCACTCTCAAATTTAGATC
 
. : . : . : . : . : . :
rJMSF047P11+ ATTAAGAATGTGATGTTTTCAGGTTTTGTTTTCTACCATTGTTGTAATATAGGGACATAC
rJMFF047B08+ ATTAAGAATGTGATGTTTTCAGGTTTTGTTTTCTA-CATTGTTGTAATATAGGGACATAC
                      ____________________________________________________________
consensus ATTAAGAATGTGATGTTTTCAGGTTTTGTTTTCTACCATTGTTGTAATATAGGGACATAC
 
. : . : . : . : . : . :
rJMSF047P11+ ATTCATCAATACTGAGTATGCCA
rJMFF047B08+ ATTCATCAATACTGAGTATGCCACTACATAAGAACAGGTTGTTTATGGAAAATATCACAC
                      ____________________________________________________________
consensus ATTCATCAATACTGAGTATGCCACTACATAAGAACAGGTTGTTTATGGAAAATATCACAC
 
. : . : . : . : . : . :
rJMFF047B08+ ATTCTCATGAAAAAAAAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus ATTCTCATGAAAAAAAAACAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG