Contig 009788:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044C20Sequence637003592 (8)ref|XP_010665155.1|9e-127PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin604009788 (5)emb|CDP17953.1|6e-53unnamed protein product [Coffea canephora]
JMFF045G19Sequence638003592 (8)ref|XP_010665155.1|2e-125PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin557009788 (5)emb|CDP17953.1|5e-44unnamed protein product [Coffea canephora]
JMSF026F07Sequence678003592 (8)ref|XP_010665155.1|8e-149PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin812009788 (5)ref|XP_009621583.1|2e-134PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X2 [Nico
JMSF029M07Sequence657003592 (8)ref|XP_010665155.1|1e-118PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Vitis vin764009788 (5)ref|XP_011078771.1|8e-130PREDICTED: polypyrimidine tract-binding protein homolog 3 [Sesamum indicum] ref
JMSF034N18Sequence682003592 (8)ref|XP_009768478.1|1e-103PREDICTED: polypyrimidine tract-binding protein homolog 3-like [Nicotiana sylve138009788 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026F07+ CAGATGGGAACGCTGCTGCCATTGCTGCTGCCTTTCCCGGTGGATTGCCACCTGGA
rJMSF029M07+ ACCTGGA
                      ____________________________________________________________
consensus CAGATGGGAACGCTGCTGCCATTGCTGCTGCCTTTCCCGGTGGATTGCCACCTGGA
 
. : . : . : . : . : . :
rJMSF026F07+ ATAAGTGGGACGAATGACAGATGTACTATTCTTGTTTCTAATCTAAATCCAGATAGAATA
rJMSF029M07+ ATAAGTGGGACGAATGACAGATGTACTATTCTTGGTTCTAATCTAAATCCAGATAGAATA
                      ____________________________________________________________
consensus ATAAGTGGGACGAATGACAGATGTACTATTCTTGTTTCTAATCTAAATCCAGATAGAATA
 
. : . : . : . : . : . :
rJMSF026F07+ GATGAAGACAAGCTTTTTAACCTTTTCTCAATTTATGGAAACATTGTCAGAATCAAACTA
rJMSF029M07+ GATGAAGACAAGCTTTTTAACCTTTTCTCAATTTATGGAAACATTGTCAGAATCAAACTA
                      ____________________________________________________________
consensus GATGAAGACAAGCTTTTTAACCTTTTCTCAATTTATGGAAACATTGTCAGAATCAAACTA
 
. : . : . : . : . : . :
rJMSF026F07+ CTCCGCAATAAACCAGATCATGCACTGGTTCAGATGGGCGATGGTTTCCAAGCTGAATTA
rJMSF029M07+ CTCCGCAATAAACCAGATCATGCACTGGTTCAGATGGGCGATGGTTTCCAAGCTGAATTA
                      ____________________________________________________________
consensus CTCCGCAATAAACCAGATCATGCACTGGTTCAGATGGGCGATGGTTTCCAAGCTGAATTA
 
. : . : . : . : . : . :
rJMSF026F07+ GCTGTGCACTTCCTGAAGGGAGGTATGCTGTTTGGTAAGCGGTTGGAGGTGAACTTCTCG
rJMSF029M07+ GCTGTGCACTTCCTGAAGGGAGGTATGCTGTTTGGTAAGCGGTTGGAGGTGAACTTCTCG
                      ____________________________________________________________
consensus GCTGTGCACTTCCTGAAGGGAGGTATGCTGTTTGGTAAGCGGTTGGAGGTGAACTTCTCG
 
. : . : . : . : . : . :
rJMSF026F07+ AAGCACCCAAACATTACCACGGGACCAGATACACACGACTATTCCAACTCTAATCTCAAT
rJMSF029M07+ AAGCACCCAAACATTACCACGGGACCAGATACACACGACTATTCCAACTCTAATCTCAAT
rJMFF044C20+ CAAT
                      ____________________________________________________________
consensus AAGCACCCAAACATTACCACGGGACCAGATACACACGACTATTCCAACTCTAATCTCAAT
 
. : . : . : . : . : . :
rJMSF026F07+ CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
rJMSF029M07+ CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
rJMFF045G19+ CCGATACTGTTGCTCCCCTACCAAGATGATC
rJMFF044C20+ CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
                      ____________________________________________________________
consensus CGTTTCAACCGTAATGCTGCCAAAAACTACCGATACTGTTGCTCCCCTACCAAGATGATC
 
. : . : . : . : . : . :
rJMSF026F07+ CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
rJMSF029M07+ CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
rJMFF045G19+ CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
rJMFF044C20+ CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
                      ____________________________________________________________
consensus CACCTGTCCACCCTCCCCCAGGACGTGAGCGAGGCCGAGATTGTATCCCACTTGGAGGAG
 
. : . : . : . : . : . :
rJMSF026F07+ CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
rJMSF029M07+ CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
rJMFF045G19+ CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
rJMFF044C20+ CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
                      ____________________________________________________________
consensus CACGGCACCATTGTCAATAGTAAGCTTTTCGAGATGAATGGGAAGAAGCAGGCTCTCGTT
 
. : . : . : . : . : . :
rJMSF026F07+ CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
rJMSF029M07+ CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
rJMFF045G19+ CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
rJMFF044C20+ CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
                      ____________________________________________________________
consensus CTTTTTGAAAACGAAGAGCAGGCTACTGAAGCCCTTGTGTGTAAGAATGCCTCTTCCCTC
 
. : . : . : . : . : . :
rJMSF026F07+ AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
rJMSF029M07+ AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
rJMFF045G19+ AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
rJMFF044C20+ AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
                      ____________________________________________________________
consensus AGTGGATCGACAATTCGGATCTCCTTCTCTCAATTGCAGAACATCTAAGAAGTAATATTA
 
. : . : . : . : . : . :
rJMSF026F07+ TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
rJMSF029M07+ TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
rJMFF045G19+ TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
rJMFF044C20+ TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
                      ____________________________________________________________
consensus TTCTCTTCATGAAACTCTGTAATCTAAGGATTTGAAACAGGGGGGTCGGGTTCTTCACTT
 
. : . : . : . : . : . :
rJMSF026F07+ CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
rJMSF029M07+ CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
rJMFF045G19+ CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
rJMFF044C20+ CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
                      ____________________________________________________________
consensus CTTCTACTCTTGTATTCAAATTTGTCATTGTAACTCTAATTTCTGCTACATCTGTACCAC
 
. : . : . : . : . : . :
rJMSF026F07+ CTATCCTCACCCACAGGAGAGCCATTTGG
rJMSF029M07+ CTATCCTCACCCACAGGAGAGCCATTTGG
rJMFF045G19+ CTATCCTCACCCACAGGAGAGCCATTTGGTAACATTTTGTTTCTCATCCTTTCATCTCTA
rJMFF044C20+ CTATCCTCACCCACAGGAGAGCCATTTGGTAACATTTTGTTTCTCATCCTTTCATCTCTA
                      ____________________________________________________________
consensus CTATCCTCACCCACAGGAGAGCCATTTGGTAACATTTTGTTTCTCATCCTTTCATCTCTA
 
. : . : . : . : . : . :
rJMFF045G19+ CTACTGTAAAACCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
rJMSF034N18+ CCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
rJMFF044C20+ CTACTGTAAAACCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
                      ____________________________________________________________
consensus CTACTGTAAAACCAAAAAAAAAAAAGACAAAAAAAATTACCAGTGTACTGTTTGATAATG
 
. : . : . : . : . : . :
rJMFF045G19+ TTTTTATTTTTTATTTTCTAAAAAAAAAAAAAAAACTCTCCAGGGT
rJMSF034N18+ TTTTTATTTTTTATTTTCTAAAA
rJMFF044C20+ TTTTTATTTTTTATTTTCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus TTTTTATTTTTTATTTTCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG