Contig 009778:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009G17Sequence590010571 (4)ref|XP_002285452.1|2e-80PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname751009778 (4)ref|XP_011091239.1|5e-91PREDICTED: pre-mRNA-processing factor 19-like [Sesamum indicum]
JMFF042O05Sequence635010571 (4)ref|XP_002285452.1|1e-89PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname611009778 (4)emb|CAN74845.1|2e-53hypothetical protein VITISV_037044 [Vitis vinifera]
JMSF006C24Sequence377002246 (7)ref|XP_009771599.1|1e-17PREDICTED: uncharacterized protein LOC104222108 isoform X2 [Nicotiana sylvestri457009778 (4)ref|XP_004172951.1|4e-30PREDICTED: U-box domain-containing protein 72-like [Cucumis sativus]
JMSF045O21Sequence684010571 (4)ref|XP_002285452.1|1e-100PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname652009778 (4)ref|XP_011091239.1|2e-52PREDICTED: pre-mRNA-processing factor 19-like [Sesamum indicum]

Alignment

This contig is upended


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rJMFF009G17+                       AACAGGTACATCAGGGTCTATTGTGAAGATTTGGGATGTAAAGAGTC
                      ____________________________________________________________
consensus                          AACAGGTACATCAGGGTCTATTGTGAAGATTTGGGATGTAAAGAGTC
 
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rJMFF009G17+          AGGCAAATGTTGCACGATTTGATGGGCACATTGGAACTGTTACTGCAATCTCCTTTTCAG
rJMSF045O21+                                                                TTTCAG
                      ____________________________________________________________
consensus             AGGCAAATGTTGCACGATTTGATGGGCACATTGGAACTGTTACTGCAATCTCCTTTTCAG
 
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rJMFF009G17+          AAAATGGTTATTTCCTAGCAACTGCTGCTCAAGATGGGGTAAAGCTCTGGGATTTACGCA
rJMSF045O21+          AAAATGGTTATTTCCTAGCAACTGCTGCTCAAGATGGGGTAAAGCTCTGGGATTTACGCA
rJMFF042O05+                                                          GGGATTTACGCA
                      ____________________________________________________________
consensus             AAAATGGTTATTTCCTAGCAACTGCTGCTCAAGATGGGGTAAAGCTCTGGGATTTACGCA
 
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rJMFF009G17+          AATTAAGGAA-TTTTAGAACTTTCACGCCATATGATGACAACACACCAACCCAAACAGTG
rJMSF045O21+          AATTAAGGAATTTTTAGAACTTTCACGCCATATGATGACAACACACCAACCCAAACAGTG
rJMFF042O05+          AATTAAGGAA-TTTTAGAACTTTCACGCCATATGATGACAACACACCAACCCAAACAGTG
                      ____________________________________________________________
consensus             AATTAAGGAA-TTTTAGAACTTTCACGCCATATGATGACAACACACCAACCCAAACAGTG
 
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rJMFF009G17+          GAATTTGACCAGAGTGGAAGTTACCTTGCCTTGGGAGGATCAGATATAAGAGTCTATCAA
rJMSF006C24+                                              GGATCAGATATAAGAGTCTATCAA
rJMSF045O21+          GAATTTGACCAGAGTGGAAGTTACCTTGCCTTGGGAGGATCAGATATAAGAGTCTATCAA
rJMFF042O05+          GAATTTGACCAGAGTGGAAGTTACCTTGCCTTGGGAGGATCAGATATAAGAGTCTATCAA
                      ____________________________________________________________
consensus             GAATTTGACCAGAGTGGAAGTTACCTTGCCTTGGGAGGATCAGATATAAGAGTCTATCAA
 
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rJMFF009G17+          GTTGCTAGTGTGAAGTCGGAATGGGGCTGCATCAGGACATTCCCTGATTTGTCAGGCACA
rJMSF006C24+          GTTGCTAGTGTGAAGTCGGAATGGGGCTGCATCAGGACATTCCCTGATTTGTCAGGCACA
rJMSF045O21+          GTTGCTAGTGTGAAGTCGGAATGGGGCTGCATCAGGACATTCCCTGATTTGTCAGGCACA
rJMFF042O05+          GTTGCTAGTGTGAAGTCGGAATGGGGCTGCATCAGGACATTCCCTGATTTGTCAGGCACA
                      ____________________________________________________________
consensus             GTTGCTAGTGTGAAGTCGGAATGGGGCTGCATCAGGACATTCCCTGATTTGTCAGGCACA
 
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rJMFF009G17+          GGCAAAGCCACATGTCTAAAATTTGGTCCAGATGCTAAATACATAGCTGTTGGATCAATG
rJMSF006C24+          GGCAAAGCCACATGTCTAAAATTTGGTCCAGATGCTAAATACATAGCTGTTGGATCAATG
rJMSF045O21+          GGCAAAGCCACATGTCTAAAATTTGGTCCAGATGCTAAATACATAGCTGTTGGATCAATG
rJMFF042O05+          GGCAAAGCCACATGTCTAAAATTTGGTCCAGATGCTAAATACATAGCTGTTGGATCAATG
                      ____________________________________________________________
consensus             GGCAAAGCCACATGTCTAAAATTTGGTCCAGATGCTAAATACATAGCTGTTGGATCAATG
 
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rJMFF009G17+          GATCGAAACCTCAGAATATTTGGGCTGCCACAGGAGGATGGTCAACCAGAAGATTAATTG
rJMSF006C24+          GATCGAAACCTCAGAATANTTGGGCTGCCACAGGAGGATGGTCAACCAGAAGATTAATTG
rJMSF045O21+          GATCGAAACCTCAGAATATTTGGGCTGCCACAGGAGGATGGTCAACCAGAAGATTAATTG
rJMFF042O05+          GATCGAAACCTCAGAATATTTGGGCTGCCACAGGAGGATGGTCAACCAGAAGATTAATTG
                      ____________________________________________________________
consensus             GATCGAAACCTCAGAATATTTGGGCTGCCACAGGAGGATGGTCAACCAGAAGATTAATTG
 
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rJMFF009G17+          CCATTTCACTGTGTTGACACTAATGGTACTTCTATAGCATATGCTTCCTGGTTGCAGGTT
rJMSF006C24+          CCATTTCACTGTGTTGACACTAATGGTACTTCTATAGCATATGCTTCCTGGTTGCAGGTT
rJMSF045O21+          CCATTTCACTGTGTTGACACTAATGGTACTTCTATAGCATATGCTTCCTGGTTGCAGGTT
rJMFF042O05+          CCATTTCACTGTGTTGACACTAATGGTACTTCTATAGCATATGCTTCCTGGTTGCAGGTT
                      ____________________________________________________________
consensus             CCATTTCACTGTGTTGACACTAATGGTACTTCTATAGCATATGCTTCCTGGTTGCAGGTT
 
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rJMFF009G17+          TTGGCGCTTATTTTGGGCAGAAGAATTTGTGAATGACTATCTTTTGAATTTGCCCAAAGC
rJMSF006C24+          TTGGCGCTTATTTTGGGCAGAAGAATTTGTGAATGACTATCTTTTGAATTTGCCCAAAGC
rJMSF045O21+          TTGGCGCTTATTTTGGGCAGAAGAATTTGTGAATGACTATCTTTTGAATTTGCCCAAAGC
rJMFF042O05+          TTGGCGCTTATTTTGGGCAGAAGAATTTGTGAATGACTATCTTTTGAATTTGCCCAAAGC
                      ____________________________________________________________
consensus             TTGGCGCTTATTTTGGGCAGAAGAATTTGTGAATGACTATCTTTTGAATTTGCCCAAAGC
 
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rJMFF009G17+          GTGGTTCCCTGCCAGATTATTAGTGACAATGCAATAAATCTGAAGCAATTTGCCATCTTA
rJMSF006C24+          GTGGTTCCCTGCCAGANTATTAGTGACAATGCAATAAATCTGAAGCAATTTGCCATCTTN
rJMSF045O21+          GTGGTTCCCTGCCAGATTATTAGTGACAATGCAATAAATCTGAAGCAATTTGCCATCTTA
rJMFF042O05+          GTGGTTCCCTGCCAGATTATTAGTGACAATGCAATAAATCTGAAGCAATTTGCCATCTTA
                      ____________________________________________________________
consensus             GTGGTTCCCTGCCAGATTATTAGTGACAATGCAATAAATCTGAAGCAATTTGCCATCTTA
 
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rJMFF009G17+          TCCACTTTGAGGGTTAATTTATCGTGTAACAAATTTTTTTTGGGGTAATATTATTGTATC
rJMSF006C24+          TCCACTCNGAGGGTTAATTTATCGTGTAACAAA-NTTTTTTGGGGTAATATTATTGTATC
rJMSF045O21+          TCCACTTTGAGGGTTAATTTATCGTGTAACAAA-TTTTTTTGGGGTAATATTATTGTATC
rJMFF042O05+          TCCACTTTGAGGGTTAATTTATCGTGTAACAAATTTTTTTTGGGGTAATATTATTGTATC
                      ____________________________________________________________
consensus             TCCACTTTGAGGGTTAATTTATCGTGTAACAAATTTTTTTTGGGGTAATATTATTGTATC
 
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rJMFF009G17+          ATACAAATGTAACAATTGTTTGGAATGGCTGAGAAAAAAAGACTA               
rJMSF006C24+          ACACAAATGNAACA                                              
rJMSF045O21+          ATACAAATGTAACAATTGTTTGGAATGGCTGAGAAAAAAAGACTA               
rJMFF042O05+          ATACAAATGTAACAATTGTTTGGAATGGCTGAGAAAAAAAGACTATTGAATATTGCTCGG
                      ____________________________________________________________
consensus             ATACAAATGTAACAATTGTTTGGAATGGCTGAGAAAAAAAGACTATTGAATATTGCTCGG