Contig 009774:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021O04Sequence543002259 (4)ref|XP_006338440.1|3e-55PREDICTED: KH domain-containing protein At4g18375-like isoform X4 [Solanum tube651009774 (3)ref|XP_006338439.1|6e-07PREDICTED: KH domain-containing protein At4g18375-like isoform X3 [Solanum tube
JMFF042K21Sequence638002259 (4)ref|XP_011098647.1|1e-70PREDICTED: KH domain-containing protein At4g18375 [Sesamum indicum] ref|XP_01109289009774 (3)
JMSF025M13Sequence642002259 (4)ref|XP_011098647.1|6e-61PREDICTED: KH domain-containing protein At4g18375 [Sesamum indicum] ref|XP_01109736009774 (3)ref|XP_006338439.1|2e-38PREDICTED: KH domain-containing protein At4g18375-like isoform X3 [Solanum tube

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+           GTTGCAGCTGAAGATGATGAGATGGTGCTGATTTCTGGAGATATTGATGTTTCAAAGGA
                      ____________________________________________________________
consensus              GTTGCAGCTGAAGATGATGAGATGGTGCTGATTTCTGGAGATATTGATGTTTCAAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          TGCGCTCTTACAAGTAACTTCACGCCTGAGGGCAAATCTTTTTGGGAGGGAAGGTGCTGT
                      ____________________________________________________________
consensus             TGCGCTCTTACAAGTAACTTCACGCCTGAGGGCAAATCTTTTTGGGAGGGAAGGTGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          ATCTGCCTTTGTGCCTGTTCTTCCATATCTTCCAATGTCAACTGATACTTCAAATACCTA
rJMFF021O04+                                          CAATGTCAACTGATACTTCAAATACCTA
                      ____________________________________________________________
consensus             ATCTGCCTTTGTGCCTGTTCTTCCATATCTTCCAATGTCAACTGATACTTCAAATACCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          TGAAAGCAAAGATGCTAGAAGGCATGGACTTGGACATTCTTATCCTGGTGATTATGGTGG
rJMFF021O04+          TGAAAGCAAAGATGCTAGAAGGCATGGACTTGGACATTCTTATCCTGGTGATTATGGTGG
                      ____________________________________________________________
consensus             TGAAAGCAAAGATGCTAGAAGGCATGGACTTGGACATTCTTATCCTGGTGATTATGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          CTTGAGTGATCTCCCACGCAGTGATGGTTACAGACGTTATGGTGGTCATCTGACTAGCAG
rJMFF021O04+          CTTGAGTGATCTCCCACGCAGTGATGGTTACAGACGTTATGGTGGTCATCTGACTAGCAG
                      ____________________________________________________________
consensus             CTTGAGTGATCTCCCACGCAGTGATGGTTACAGACGTTATGGTGGTCATCTGACTAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          CAACAGGCATGGAGCATATGAAGGACAACCACTGGGTCGTTCTGGTGGTTCTGGGTTGTC
rJMFF021O04+          CAACAGGCATGGAGCATATGAAGGACAACCACTGGGTCGTTCTGGTGGTTCTGGGTTGTC
                      ____________________________________________________________
consensus             CAACAGGCATGGAGCATATGAAGGACAACCACTGGGTCGTTCTGGTGGTTCTGGGTTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          TGGATCTAAGCATGAACCCCGGAGAAAAAGTTATGGTTACTAAAGTTTTCTTGCCTGATG
rJMFF021O04+          TGGATCTAAGCATGAACCCCGGAGAAAAAGTTATGGTTACTAAAGTTTTCTTGCCTGATG
                      ____________________________________________________________
consensus             TGGATCTAAGCATGAACCCCGGAGAAAAAGTTATGGTTACTAAAGTTTTCTTGCCTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          TTCAGCTGCATATCTGAAGCCCGAAGCCCAGCCTACTCTGCCCCCTTTGATGAAGCCTTC
rJMFF021O04+          TTCAGCTGCATATCTGAAGCCCGAAGCCCAGCCTACTCTGCCCCCTTTGATGAAGCCTTC
                      ____________________________________________________________
consensus             TTCAGCTGCATATCTGAAGCCCGAAGCCCAGCCTACTCTGCCCCCTTTGATGAAGCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          TGCCTAAACCAGAAGACCAGATGAATGAGGATTCGGAAAACTCATGGACCCATCTTGATG
rJMFF021O04+          TGCCTAAACCAGAAGACCAGATGAATGAGGATTCGGAAAACTCATGGACCCATCTTGATG
                      ____________________________________________________________
consensus             TGCCTAAACCAGAAGACCAGATGAATGAGGATTCGGAAAACTCATGGACCCATCTTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          CTTTTGCTTAGAAGGGCCAATTTCTGAAGATTTTACTCCATACCTATTATTGAAAATTTG
rJMFF021O04+          CTTTTGCTTAGAAGGGCCAATTTCTGAAGATTTTACTCCATACCTATTATTGAAAATTTG
rJMFF042K21+                     AAGGGCCAATTTCTGAAGATTTCACTCCACACCTATTATTGAAAATTTG
                      ____________________________________________________________
consensus             CTTTTGCTTAGAAGGGCCAATTTCTGAAGATTTTACTCCATACCTATTATTGAAAATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          CCATGTCCCGAGACTACCATACAGTACCAAGCTCTGCTCCCATTATCCTATGCAACTAGC
rJMFF021O04+          CCATGTCCCGAGACTACCATACAGTACCAAGCTCTGCTCCCATTATCCTATGCAACTAGC
rJMFF042K21+          CCATGTCCCGAGCCTACCATACAGTACCAAGCTCTGCTCCCATTATCCTATGCAACTAGC
                      ____________________________________________________________
consensus             CCATGTCCCGAGACTACCATACAGTACCAAGCTCTGCTCCCATTATCCTATGCAACTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          AAACCTCTGTATACTCTTACATGTTACCCGCGTTTCTTTTTGTTTTTTAAGATCATAATG
rJMFF021O04+          AAACCTCTGTATACTCTTACATGTTACCCGCGTTTCTTTTTGTTTTTTAAGATCATAATG
rJMFF042K21+          AAACCTCTGTATACTCTTACATGTTACCCGCGTTTCTTTTTGTTTTTTAAGATCATAATG
                      ____________________________________________________________
consensus             AAACCTCTGTATACTCTTACATGTTACCCGCGTTTCTTTTTGTTTTTTAAGATCATAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF025M13+          TTTTCATT                                                    
rJMFF021O04+          TTTTCATTTGTGAAGAGTTACTGTTAATTGAATCTATTTAGTTGCCTAACTTGTCTGCTA
rJMFF042K21+          TTTTCATTTGTGAAGAGTTACTGTTAATTGAATCTATTTAGTTGCCTAACCTGTCTGGTA
                      ____________________________________________________________
consensus             TTTTCATTTGTGAAGAGTTACTGTTAATTGAATCTATTTAGTTGCCTAACTTGTCTGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF021O04+          TCTTGTCGAATTAAGTAGCATAG                                     
rJMFF042K21+          TCTTGTTGAACTAAGTAGCATAGTTGGATCTTTTTTGACCTTAATTACCAAATGTTCTTT
                      ____________________________________________________________
consensus             TCTTGTTGAATTAAGTAGCATAGTTGGATCTTTTTTGACCTTAATTACCAAATGTTCTTT