Contig 009764:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023K22Sequence522009764 (4)ref|XP_008356551.1|4e-64PREDICTED: transcription repressor MYB5-like [Malus domestica]642009764 (4)ref|XP_008356551.1|4e-70PREDICTED: transcription repressor MYB5-like [Malus domestica]
JMFF041I12Sequence632009764 (4)ref|XP_008356551.1|3e-70PREDICTED: transcription repressor MYB5-like [Malus domestica]608009764 (4)ref|XP_008356551.1|3e-65PREDICTED: transcription repressor MYB5-like [Malus domestica]

Alignment

This contig is upended


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JMFF041I12-                                                               ATGCCTTC
JMFF023K22-                                                               ATGCCTTC
rJMFF023K22+                                                              ATGCCTTC
                      ____________________________________________________________
consensus                                                                 ATGCCTTC
 
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JMFF041I12-           AAGAAAGAGTGGAGGTGCTAGAATGCATGTTCATAAAGGAGCATGGACGGCTGAGGAGGA
JMFF023K22-           AAGAAAGAGTGGAGGTGCTAGAATGCATGTTCATAAAGGAGCATGGACGGCTGAGGAGGA
rJMFF023K22+          AAGAAAGAGTGGAGGTGCTAGAATGCATGTTCATAAAGGAGCATGGACGGCTGAGGAGGA
rJMFF041I12+                                                                  AGGA
                      ____________________________________________________________
consensus             AAGAAAGAGTGGAGGTGCTAGAATGCATGTTCATAAAGGAGCATGGACGGCTGAGGAGGA
 
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JMFF041I12-           CAAGAAACTGACCCACTACATTGAGAATCATGGTGCTAAAAAGTGGAAAACTGTGGCCAT
JMFF023K22-           CAAGAAACTGACCCACTACATTGAGAATCATGGTGCTAAAAAGTGGAAAACTGTGGCCAT
rJMFF023K22+          CAAGAAACTGACCCACTACATTGAGAATCATGGTGCTAAAAAGTGGAAAACTGTGGCCAT
rJMFF041I12+          CAAGAAACTGACCCACTACATTGAGAATCATGGTGCTAAAAAGTGGAAAACTGTGGCCAT
                      ____________________________________________________________
consensus             CAAGAAACTGACCCACTACATTGAGAATCATGGTGCTAAAAAGTGGAAAACTGTGGCCAT
 
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JMFF041I12-           CAAATCAGGCTTGAATAGGTGTGGTAAAAGTTGTAGGCTGAGGTGGTTGAACTATCTGAG
JMFF023K22-           CAAATCAGGCTTGAATAGGTGTGGTAAAAGTTGTAGGCTGAGGTGGTTGAACTATCTGAG
rJMFF023K22+          CAAATCAGGCTTGAATAGGTGTGGTAAAAGTTGTAGGCTGAGGTGGTTGAACTATCTGAG
rJMFF041I12+          CAAATCAGGCTTGAATAGGTGTGGTAAAAGTTGTAGGCTGAGGTGGTTGAACTATCTGAG
                      ____________________________________________________________
consensus             CAAATCAGGCTTGAATAGGTGTGGTAAAAGTTGTAGGCTGAGGTGGTTGAACTATCTGAG
 
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JMFF041I12-           GCCAAACATCAAGAGAGGCAACATAGCTGAAGATGAAGCTGACTTGATCCTTAGGCTTCA
JMFF023K22-           GCCAAACATCAAGAGAGGCAACATAGCTGAAGATGAAGCTGACTTGATCCTTAGGCTTCA
rJMFF023K22+          GCCAAACATCAAGAGAGGCAACATAGCTGAAGATGAAGCTGACTTGATCCTTAGGCTTCA
rJMFF041I12+          GCCAAACATCAAGAGAGGCAACATAGCTGAAGATGAAGCTGACTTGATCCTTAGGCTTCA
                      ____________________________________________________________
consensus             GCCAAACATCAAGAGAGGCAACATAGCTGAAGATGAAGCTGACTTGATCCTTAGGCTTCA
 
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JMFF041I12-           TAAACTACTAGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGGCGAACCGACAA
JMFF023K22-           TAAACTACTAGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGGCGAACCGACAA
rJMFF023K22+          TAAACTACTAGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGGCGAACCGACAA
rJMFF041I12+          TAAACTACTAGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGGCGAACCGACAA
                      ____________________________________________________________
consensus             TAAACTACTAGGAAACAGGTGGTCTTTGATAGCTGGGAGACTTCCAGGGCGAACCGACAA
 
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JMFF041I12-           TGAAATCAAGAACTACTGGAATACTCATTTGAGCAAAAAAGTCACCCAACTGGGAAAATC
JMFF023K22-           TGAAATCAAGAACTACTGGAATACTCATTTGAGCAAAAAAGTCACCCAACTGGGAAAATC
rJMFF023K22+          TGAAATCAAGAACTACTGGAATACTCATTTGAGCAAAAAAGTCACCCAACTGGGAAAATC
rJMFF041I12+          TGAAATCAAGAACTACTGGAATACTCATTTGAGCAAAAAAGTCACCCAACTGGGAAAATC
                      ____________________________________________________________
consensus             TGAAATCAAGAACTACTGGAATACTCATTTGAGCAAAAAAGTCACCCAACTGGGAAAATC
 
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JMFF041I12-           TTCTTTACCAGCAACAGAAAATCAGCCACCCAAGAATGGCATGGCCGATGCTGAGCAAAT
JMFF023K22-           TTCTTTACCAGCAACAGAAAATCAGCCACCCAAGAATGGCATGGCCGATGCTGAGCAAAT
rJMFF023K22+          TTCTTTACCAGCAACAGAAAATCAGCCACCCAAGAATGGCATGGCCGATGCTGAGCAAAT
rJMFF041I12+          TTCTTTACCAGCAACAGAAAATCAGCCACCCAAGAATGGCATGGCCGATGCTGAGCAAAT
                      ____________________________________________________________
consensus             TTCTTTACCAGCAACAGAAAATCAGCCACCCAAGAATGGCATGGCCGATGCTGAGCAAAT
 
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JMFF041I12-           GGGAGGCAATAAAGAAAGCGAAGAAGACCCAGAATTGAACTTTGATGTAGATGAGTTCTT
JMFF023K22-           GGGAGGCAATAAAGAAAGCGAAGAAGACCCAGAATTGAACTTTGATGTAGATGAGTTCTT
rJMFF023K22+          GGGAGGCAATAAAGAAAGCGAAGAAGACCCAGAATTGAACTTTGATGTAGATGAGTTCTT
rJMFF041I12+          GGGAGGCAATAAAGAAAGCGAAGAAGACCCAGAATTGAACTTTGATGTAGATGAGTTCTT
                      ____________________________________________________________
consensus             GGGAGGCAATAAAGAAAGCGAAGAAGACCCAGAATTGAACTTTGATGTAGATGAGTTCTT
 
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JMFF041I12-           TGACTTCTCTGTGGAAGGGACATATGGCACAGAATGGGTCAACAAGTTTCTTGAAGTTGA
JMFF023K22-           TGACTTCTCTGTGGAAGGGACATATGGCACAGAA                          
rJMFF023K22+          TGACTTCTCTGTGGAAGGGACATATGGCACAGAATGGGTCAACAAGTTTCTTGAAGTTGA
rJMFF041I12+          TGACTTCTCTGTGGAAGGGACATATGGCACAGAATGGGTCAACAAGTTTCTTGAAGTTGA
                      ____________________________________________________________
consensus             TGACTTCTCTGTGGAAGGGACATATGGCACAGAATGGGTCAACAAGTTTCTTGAAGTTGA
 
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JMFF041I12-           AAAGGGTATGCCATAGATGGCTGGCAGATTGTAATGTATTAATATGCCTACCTAATGCCT
rJMFF023K22+          AAAGGGTATGCCATAGATGGCTGGCAGATTGTAATGTATTAATATGCCTACCTAATGCCT
rJMFF041I12+          AAAGGGTATGCCATAGATGGCTGGCAGATTGTAATGTATTAATATGCCTACCTAATGCCT
                      ____________________________________________________________
consensus             AAAGGGTATGCCATAGATGGCTGGCAGATTGTAATGTATTAATATGCCTACCTAATGCCT
 
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JMFF041I12-           GTGCAGAAGACTAACCTGTACTGT                                    
rJMFF023K22+          GTGCAGAAGACTAACCTGTACTGTACTTGAGCAT                          
rJMFF041I12+          GTGCAGAAGACTAACCTGTACTGTACTTGAGCATGAATGTGATGATGAAATCAATTCGGT
                      ____________________________________________________________
consensus             GTGCAGAAGACTAACCTGTACTGTACTTGAGCATGAATGTGATGATGAAATCAATTCGGT