Contig 009754:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+                                            TGAACAAGTGGGCGGAGACCCTAGAG
                      ____________________________________________________________
consensus                                               TGAACAAGTGGGCGGAGACCCTAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          ATGTTCCATACTCAAATCCCATCCATGGAATCACTCCGAGGGAAGGAGAATTGATCAGGA
rJMFF039E16+                                                   GAAGGAGAATTGATCAGGA
                      ____________________________________________________________
consensus             ATGTTCCATACTCAAATCCCATCCATGGAATCACTCCGAGGGAAGGAGAATTGATCAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          ACTTCCTGAAGATCAGTGCCAGTCAACTGACTATCTATGGATTGTTTTGCTTGCAAGATG
rJMFF039E16+          ACTTCCTGAAGATCAGTGCCAGTCAACTGACTATCTATGGATTGTTTTGCTTGCAAGATG
                      ____________________________________________________________
consensus             ACTTCCTGAAGATCAGTGCCAGTCAACTGACTATCTATGGATTGTTTTGCTTGCAAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          GTCTTAAAGAGCGAGAACTTTGTGTTTTCTTTAGGAACAATCATTTCAACACCATGTTTA
rJMFF039E16+          GTCTTAAAGAGCGAGAACTTTGTGTTTTCTTTAGGAACAATCATTTCAACACCATGTTTA
                      ____________________________________________________________
consensus             GTCTTAAAGAGCGAGAACTTTGTGTTTTCTTTAGGAACAATCATTTCAACACCATGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          AGTTTGAAGGGGATTTATATATTTTGGCTACAGACCAGGGATTTATAAATCAGCCTGAGT
rJMFF039E16+          AGTTTGAAGGGGATTTATATATTTTGGCTACAGACCAGGGATTTATAAATCAGCCTGAGT
                      ____________________________________________________________
consensus             AGTTTGAAGGGGATTTATATATTTTGGCTACAGACCAGGGATTTATAAATCAGCCTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          TGGTGTGGGAAAAGCTCAACGAGGTGAATGGGAACACACAGTACGTGACTGGTAATTTTA
rJMFF039E16+          TGGTGTGGGAAAAGCTCAACGAGGTGAATGGGAACACACAGTACGTGACTGGTAATTTTA
                      ____________________________________________________________
consensus             TGGTGTGGGAAAAGCTCAACGAGGTGAATGGGAACACACAGTACGTGACTGGTAATTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          AGGAGTTCAAGGTGGAAACTCTTGCTAGTACACCATGGGATGAGCAGAGTGCCTTAGCCA
rJMFF039E16+          AGGAGTTCAAGGTGGAAACTCTTGCTAGTACACCATGGGATGAGCAGAGTGCCTTAGCCA
                      ____________________________________________________________
consensus             AGGAGTTCAAGGTGGAAACTCTTGCTAGTACACCATGGGATGAGCAGAGTGCCTTAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF020A21+          ATACAGCTGACTACCTTGCCAGCATTGACAATGCAGCACAAGGGCAATCAAATTTCAATT
rJMFF039E16+          ATACAGCTGACTACCTTGCCAGCATTGACAATGCAGCACAAGGGCAATCAAATTTCAATT
                      ____________________________________________________________
consensus             ATACAGCTGACTACCTTGCCAGCATTGACAATGCAGCACAAGGGCAATCAAATTTCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006A19+                          TATAGCTNTTCAGCAGCAGGAATTCGAGCNACANCAGNCACNAC
rJMSF020A21+          CCGATCTCCAATTGGCTATAGCTCTTCAGCAGCAGGAATTCGAGCAACAGCAGGCACAAC
rJMFF039E16+          CCGATCTCCAATTGGCTATAGCTCTTCAGCAGCAGGAATTCGAGCAACAGCAGGCACAAC
                      ____________________________________________________________
consensus             CCGATCTCCAATTGGCTATAGCTCTTCAGCAGCAGGAATTCGAGCAACAGCAGGCACAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006A19+          AGAACACTCGTAATCNACAACAGCCNACTNTAAATGGAGGGTCGGGANTGNTAACAGGCC
rJMSF020A21+          AGAACACTCGTAATCAACAACAGCCAACTATAAATGGAGGGTCGGGATTGATAACAGGCC
rJMFF039E16+          AGAACACTCGTAATCAACAACAGCCAACTATAAATGGAGGGTCGGGATTGATAACAGGCC
                      ____________________________________________________________
consensus             AGAACACTCGTAATCAACAACAGCCAACTATAAATGGAGGGTCGGGATTGATAACAGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006A19+          CTCAGGTATCGAGGNACAGTGGNCAACAGCAGCAGATGTCTTCGTCTGCGAGGCAGGAGC
rJMSF020A21+          CTCAGGTATCGAGGTACAGTGGACAACAGCAGCAGATGTCTTCGTCTGCGAGGCAGGAGC
rJMFF039E16+          CTCAGGTATCGAGGTACAGTGGACAACAGCAGCAGATGTCTTCGTCTGCGAGGCAGGAGC
                      ____________________________________________________________
consensus             CTCAGGTATCGAGGTACAGTGGACAACAGCAGCAGATGTCTTCGTCTGCGAGGCAGGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006A19+          CAAAGTCGGCGAAAGATAAATGCATTGTGATGTAAGATGAGCATGTTATTGTGAAGGTGT
rJMSF020A21+          CAAAGTCGGCGAAAGATAAATGCATTGTGATGTAAGATGAGCATGTTATTGTGAAGGTGT
rJMFF039E16+          CAAAGTCGGCGAAAGATAAATGCATTGTGATGTAAGATGAGCATGTTATTGTGAAGGTGT
                      ____________________________________________________________
consensus             CAAAGTCGGCGAAAGATAAATGCATTGTGATGTAAGATGAGCATGTTATTGTGAAGGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006A19+          GATGTAAATGATGTGACATTTTGGATTTCCCCTCTTCCTTCCTCTATACCAATAAACCAT
rJMSF020A21+          GATGTAAATGATGTGACATTTTGGATTTCCCCTCTTCCTTCCTTTATACCAATAAACCAT
rJMFF039E16+          GATGTAAATGATGTGACATTTTGGATTTCCCCTCTTCCTTCCTTTATACCAATAAACCAT
                      ____________________________________________________________
consensus             GATGTAAATGATGTGACATTTTGGATTTCCCCTCTTCCTTCCTTTATACCAATAAACCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006A19+          ATTTCCAATTCAAACTCTGCTTTT                                    
rJMSF020A21+          ATTTCCAATTCAAACTCTGCTTTT                                    
rJMFF039E16+          ATTTCCAATTCAAACTCTGCTTTTTATCTCGTGTATATATACAGTCAGTTAATATCATCT
                      ____________________________________________________________
consensus             ATTTCCAATTCAAACTCTGCTTTTTATCTCGTGTATATATACAGTCAGTTAATATCATCT