Contig 009748:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002B20Sequence576010341 (6)ref|XP_002285452.1|1e-95PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname799009748 (5)ref|XP_009594705.1|1e-114PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMFF026H01Sequence561010341 (6)ref|XP_002285452.1|5e-96PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname661009748 (5)ref|XP_009594705.1|4e-89PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMFF037E11Sequence578010341 (6)ref|XP_002285452.1|1e-95PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname674009748 (5)ref|XP_009594705.1|1e-90PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMSF012P15Sequence463010341 (6)emb|CDO99306.1|8e-77unnamed protein product [Coffea canephora]714009748 (5)ref|XP_009594705.1|2e-97PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMSF042A04Sequence638010341 (6)ref|XP_002285452.1|6e-104PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname254009748 (5)ref|XP_009594705.1|1e-16PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF002B20+ TAATACTTGGTGCTTTTATG
                      ____________________________________________________________
consensus TAATACTTGGTGCTTTTATG
 
. : . : . : . : . : . :
rJMSF012P15+ ATTGGAGATTCTTCAGAATCTGATGGCTATA
rJMFF002B20+ AACTTGCTTCAGGTTTATGCCTTACTCAGATTGGAGATTCTTCAGAATCTGATGGCTATA
                      ____________________________________________________________
consensus AACTTGCTTCAGGTTTATGCCTTACTCAGATTGGAGATTCTTCAGAATCTGATGGCTATA
 
. : . : . : . : . : . :
rJMSF012P15+ CATCTGCAGCCTTTCATCCTGATGGTCTGATTCTTGGAACTGGAACAACTGGGGCTATTG
rJMFF026H01+ CAACTGGGGCTATTG
rJMFF002B20+ CATCTGCAGCCTTTCATCCTGATGGTCTGATTCTTGGAACTGGAACAACTGGGGCTATTG
rJMFF037E11+ CAACTGGGGCTATTG
                      ____________________________________________________________
consensus CATCTGCAGCCTTTCATCCTGATGGTCTGATTCTTGGAACTGGAACAACTGGGGCTATTG
 
. : . : . : . : . : . :
rJMSF012P15+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
rJMFF026H01+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTNGGAG
rJMFF002B20+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
rJMFF037E11+ TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
                      ____________________________________________________________
consensus TGAAGATTTGGGATGTTAAGAGTCAGGCAAATGTTGCACGATTTGATGGCCATGTTGGAG
 
. : . : . : . : . : . :
rJMSF012P15+ CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCAAGATG
rJMFF026H01+ CTGTTACTGCCATCTCNTTTTCTGAAAATGGTTATTTCTTGGCAANTGCAGCTCAAGATG
rJMFF002B20+ CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCGAGATG
rJMFF037E11+ CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCAAGATG
                      ____________________________________________________________
consensus CTGTTACTGCCATCTCCTTTTCTGAAAATGGTTATTTCTTGGCAACTGCAGCTCAAGATG
 
. : . : . : . : . : . :
rJMSF012P15+ GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
rJMFF026H01+ GTGTCAAGCTNTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
rJMFF002B20+ GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
rJMFF037E11+ GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
                      ____________________________________________________________
consensus GTGTCAAGCTCTGGGATTTACGGAAGTTGAGGAATTTCAGAAACTTCTCTCCTTATGATG
 
. : . : . : . : . : . :
rJMSF012P15+ AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
rJMSF042A04+ TTGGGAG
rJMFF026H01+ AAAATACACCANCCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
rJMFF002B20+ AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
rJMFF037E11+ AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
                      ____________________________________________________________
consensus AAAATACACCAACCCAAACAGTTGAATTTGACCACAGCGGAAGTTACCTTGCATTGGGAG
 
. : . : . : . : . : . :
rJMSF012P15+ GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
rJMSF042A04+ GNTCAGNTATANGGGTCCATCAAGNTGNTAGTGTAAAGTCAGACTGGANCAGCATCAAAA
rJMFF026H01+ GCTCAGATATAAGGGTCCATCAAGTTGNTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
rJMFF002B20+ GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
rJMFF037E11+ GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
                      ____________________________________________________________
consensus GCTCAGATATAAGGGTCCATCAAGTTGCTAGTGTAAAGTCAGACTGGAACAGCATCAAAA
 
. : . : . : . : . : . :
rJMSF012P15+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMSF042A04+ CATTCCCTGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMFF026H01+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMFF002B20+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
rJMFF037E11+ CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
                      ____________________________________________________________
consensus CATTCCCCGACTTGTCAGGAACAGGTAAAGCCACGTGTCTAAAATTCGGTCCAGACGCCA
 
. : . : . : . : . : . :
rJMSF012P15+ AATACATA-GCTGTTGGATCGATGGATCGAAACCTC--AATATTCGGCTTGCCCGGGGAT
rJMSF042A04+ AATACATAGGCTGTNGGATCGATGGATCGAAACCTCAGAATATTNGGCTTGCCCGGGGAT
rJMFF026H01+ AATACATA-GCTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
rJMFF002B20+ AATACATA-GTTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
rJMFF037E11+ AATACATA-GCTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
                      ____________________________________________________________
consensus AATACATA-GCTGTTGGATCGATGGATCGAAACCTCAGAATATTCGGCTTGCCCGGGGAT
 
. : . : . : . : . : . :
rJMSF012P15+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
rJMSF042A04+ GATGCTCAGCCAGAAGATTAATTTCACTNTCACAAATCACAATGCATGCGGNAGAGCCAT
rJMFF026H01+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
rJMFF002B20+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
rJMFF037E11+ GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
                      ____________________________________________________________
consensus GATGCTCAGCCAGAAGATTAATTTCACTCTCACAAATCACAATGCATGCTGTAGAGCCAT
 
. : . : . : . : . : . :
rJMSF012P15+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
rJMSF042A04+ AGAGTCT
rJMFF026H01+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTNGGTGTCACGTAGTGCAATAG
rJMFF002B20+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
rJMFF037E11+ AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
                      ____________________________________________________________
consensus AGAGTCTCATGAATCTGAAGAGTAATATAGTTTCCATTTTGGTGTCACGTAGTGCAATAG
 
. : . : . : . : . : . :
rJMSF012P15+ AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
rJMFF026H01+ AATCTGACGGTTCTTANCCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
rJMFF002B20+ AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
rJMFF037E11+ AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
                      ____________________________________________________________
consensus AATCTGACGGTTCTTAACCTGCCCTGTGATCATATGGTTGCCGTTCAGACTTGATTAACT
 
. : . : . : . : . : . :
rJMSF012P15+ TTCAATGAGAAC
rJMFF026H01+ TTCAATGAGAACAGTTNNGTTGTACCATTCCTGTATCCGTTGCTGC
rJMFF002B20+ TTCAATGAGAACAGTTTTGTTGTACCATTCCTGTATCCGTTGCTGCT
rJMFF037E11+ TTCAATGAGAACAGTTTTGTTGTACCATTCCTGTATCCGTTGCTGCTGAAAAGAAGATTG
                      ____________________________________________________________
consensus TTCAATGAGAACAGTTTTGTTGTACCATTCCTGTATCCGTTGCTGCTGAAAAGAAGATTG