Contig 009667:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015J20Sequence532009449 (2)ref|XP_006351757.1|5e-37PREDICTED: dicarboxylate transporter 2.1, chloroplastic-like [Solanum tuberosum680009667 (4)ref|XP_010315125.1|2e-64PREDICTED: LOW QUALITY PROTEIN: dicarboxylate transporter 2.1, chloroplastic-li
JMSF019C07Sequence765009667 (4)ref|XP_010315125.1|1e-105PREDICTED: LOW QUALITY PROTEIN: dicarboxylate transporter 2.1, chloroplastic-li
JMSF035H14Sequence646009449 (2)ref|XP_006351757.1|8e-51PREDICTED: dicarboxylate transporter 2.1, chloroplastic-like [Solanum tuberosum726009667 (4)ref|XP_010315125.1|8e-98PREDICTED: LOW QUALITY PROTEIN: dicarboxylate transporter 2.1, chloroplastic-li
JMSF048L24Sequence670008075 (3)ref|XP_004244513.1|2e-62PREDICTED: enhancer of rudimentary homolog [Solanum lycopersicum] ref|XP_0063570698009667 (4)ref|XP_010315125.1|4e-99PREDICTED: LOW QUALITY PROTEIN: dicarboxylate transporter 2.1, chloroplastic-li

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C07+                                TGAATGGACAATGATTGGAACAATGCTTCTTGCTGTCT
                      ____________________________________________________________
consensus                                   TGAATGGACAATGATTGGAACAATGCTTCTTGCTGTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+                        GGGGATGCACTNGGCATCGCAAGTGTTGTTGCTGCCATGCTTGGGT
rJMSF019C07+          CCTTGTGGGGTTTNGGGGATGCACNTGGCATCGCAAGTGTTGTTGCTGCCATNCNTGGGT
                      ____________________________________________________________
consensus             CCTTGTGGGGTTTNGGGGATGCACTTGGCATCGCAAGTGTTGTTGCTGCCATGCTTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          TATCGATTCTCTTGTTGTTAGGAGTGCTTGATTGGGATGACTGCTTAAGTGAAAAATCCG
rJMSF019C07+          TATCGATTCTCTTGTTGTTAGGAGTGCTTGATTGGGATGACTGCTTAAGTGAAAAATCCG
rJMSF035H14+                                            GGATGACTGCTTAAGTGAAAAATCCG
                      ____________________________________________________________
consensus             TATCGATTCTCTTGTTGTTAGGAGTGCTTGATTGGGATGACTGCTTAAGTGAAAAATCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          CTTGGGATACTCTGGCATGGTTTGCAGTTCTAGTGGGCATGGCAAGCCAGTTGACTAACC
rJMSF019C07+          CTTGGGATACTCTGGCATGGTTTGCAGTTNTAGTGGGCATGGCAAGCCAGTTGACTAACC
rJMSF035H14+          CTTGGGATACTCTGGCATGGTTTGCAGTTCTAGTGGGCATGGCAAGCCAGTTGACTAACC
                      ____________________________________________________________
consensus             CTTGGGATACTCTGGCATGGTTTGCAGTTCTAGTGGGCATGGCAAGCCAGTTGACTAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          TTGGAATTGTTAGTTGGATGTCTAACTGTGTAGCGAAGTCTCTTCAATGTTTATCATTGA
rJMSF019C07+          TTGGAATTGTTAGTTGGATGTCTAACTGTGTAGCGAAGTCTCTTCAATGTTTATCATTGA
rJMSF035H14+          TTGGAATTGTTAGTTGGATGTCTAACTGTGTAGCGAAGTCTCTTCAATGTTTATCATTGA
rJMFF015J20+                                                  TCTTCAATGTTTATCATTGA
                      ____________________________________________________________
consensus             TTGGAATTGTTAGTTGGATGTCTAACTGTGTAGCGAAGTCTCTTCAATGTTTATCATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          GCTGGCCAGCTGCGTTTCTCATACTTCAAGCATCTTACTTCTGTATCCACTACCTATTTG
rJMSF019C07+          GCTGGCCAGCTGCGTTTCTCATACTTCAAGCATCTTACTTCTGTATCCACTACCTATTTG
rJMSF035H14+          GCTGGCCAGCTGCGTTTCTCATACTTCAAGCATCTTACTTCTGTATCCACTACCTATTTG
rJMFF015J20+          GCTGNCCAGCTGCGTTTCTCATACTTCAAGCATCTTACTTCTGTATCCACTACCTATTTG
                      ____________________________________________________________
consensus             GCTGGCCAGCTGCGTTTCTCATACTTCAAGCATCTTACTTCTGTATCCACTACCTATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          CAAGCCAAACTGGCCACGTGGGAGCATTATACTCCGCATTCCTTGCTATGAATTTAGCCT
rJMSF019C07+          CAAGCCAAACTGGCCACGTGGGAGCATTATACTCCGCATTCCTTGCTATGAATTTAGCCT
rJMSF035H14+          CAAGCCAAACTGGCCACGTGGGAGCATTATACTCCGCATTCCTTGCTATGAATTTAGCCT
rJMFF015J20+          CAAGCCAAACTGGCCACGTGGGAGCATTATACTCCGCATTCCTTGCTATGAATTTAGCCT
                      ____________________________________________________________
consensus             CAAGCCAAACTGGCCACGTGGGAGCATTATACTCCGCATTCCTTGCTATGAATTTAGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          CTGGAGTGCCTGGTGTTTTAGCAGCATTGGGTTTGGCGTATAATACTAACCTGTTTGGTG
rJMSF019C07+          NTGGAGTGCCTGGTGTTTTAGCAGCATTGGGTTTGGCGTATAATACTAACCTGTTTGGTG
rJMSF035H14+          CTGGAGTGCCTGGTGTTTTAGCAGCATTGGGTTTGGCGTATAATACTAACCTGTTTGGTG
rJMFF015J20+          CTGGAGTGCCTGGTGTTTTAGCAGCATTGGGTTTGGCGTATAATACTAACCTGTTTGGTG
                      ____________________________________________________________
consensus             CTGGAGTGCCTGGTGTTTTAGCAGCATTGGGTTTGGCGTATAATACTAACCTGTTTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          CTTTGACACATTATAGCAGTGGTCAAGCTGCTGTTTACTTTGGAGCTGGGTATGTAGATC
rJMSF019C07+          CTTTGACACATTATAGCAGTGGTCAAGCTGCTGTTTACTTTGGAGCTGGGTATGTAGATC
rJMSF035H14+          CTTTGACACATTATAGCAGTGGTCAAGCTGCTGTTTACTTTGGAGCTGGGTATGTAGATC
rJMFF015J20+          CTTTGACACATTATAGCAGTGGTCAAGCTGCTGTTTACTTTGGAGCTGGGTATGTAGATC
                      ____________________________________________________________
consensus             CTTTGACACATTATAGCAGTGGTCAAGCTGCTGTTTACTTTGGAGCTGGGTATGTAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          TCCCGGATGTGTTCAAATTTGGATTTATAATGGCTGTCATCAATGCATTAATTTGGGGAG
rJMSF019C07+          TCCCGGATGTGTTCAAATTTGGATTTATAATGGCTGTCATCAATGCATTAATTTGGGGAG
rJMSF035H14+          TCCCGGATGTGTTCAAATTTGGATTTATAATGGCTGTCATCAATGCATTAATTTGGGGAG
rJMFF015J20+          TCCCGGATGTGTTCAAATTTGGATTTATAATGGCTGTCATCAATGCATTAATTTGGGGAG
                      ____________________________________________________________
consensus             TCCCGGATGTGTTCAAATTTGGATTTATAATGGCTGTCATCAATGCATTAATTTGGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          TTGTTGGCACTTTCTGGTGGAAGTTCCTGGGGCTATACTGAGTTAAATTCATGCAGGCAG
rJMSF019C07+          TTGTTGGCACTTTCTGGTGGAAGTTCCTGGGGCTATACTGAGNTAAATTCATGCAGGCAG
rJMSF035H14+          TTGTTGGCACTTTCTGGTGGAAGTTCCTGGGGCTATACTGAGTTAAATTCATGCAGGCAG
rJMFF015J20+          TTGTTGGCACTTTCTGGTGGAAGTTCCTGGGGCTATACTGAGTTAAATTCATGCAGGCAG
                      ____________________________________________________________
consensus             TTGTTGGCACTTTCTGGTGGAAGTTCCTGGGGCTATACTGAGTTAAATTCATGCAGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          GCCATGTAAGTAGAATTTTCCCCGCAAATTCCTTCTCCCCGCTTTGTCATAGATAGCTGC
rJMSF019C07+          GCCATGTAAGTAGAATTTTCCCCGCAAATTCCTTCTCCCCGCTTTGTCATAGATAGCTGC
rJMSF035H14+          GCCATGTAAGTAGAATTTTCCCCGCAAATTCCTTCTCCCCGCTTTGTCATAGATAGCTGC
rJMFF015J20+          GCCATGTAAGTAGAATTTTCCCCGCAAATTCCTTCTCCCCGCTTTGTCATAGATAGCTGC
                      ____________________________________________________________
consensus             GCCATGTAAGTAGAATTTTCCCCGCAAATTCCTTCTCCCCGCTTTGTCATAGATAGCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048L24+          TAGCAACAGCAAGTCTTTCACATACTAGTGAAAAAGTTGGCGAGGCAT            
rJMSF019C07+          TAGCAACAGCAAGTCTTTCACATACTAGTGAAAAAGTTGGCGAGGCATNCCCATTTTCAG
rJMSF035H14+          TAGCAACAGCAAGTCTTTCACATACTAGTGAAAAAGTTGGCGAGGCATTCCCATTTTCAG
rJMFF015J20+          TAGCAACAGCAAGTCTTTCACATACTAGTGAAAAAGTTGGCGAGGCATTCCCATTTTCAG
                      ____________________________________________________________
consensus             TAGCAACAGCAAGTCTTTCACATACTAGTGAAAAAGTTGGCGAGGCATTCCCATTTTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019C07+          AAATAAT                                                     
rJMSF035H14+          AAATAATTTACAGCTAATATTTTTCTTGGCACTCTGATGGATATGATGAAATTCAA-TTT
rJMFF015J20+          AAATAATTTACAGCTAATATTTTTCTTGGCACTCTGATGGATATGATGAAATTCAATTTT
                      ____________________________________________________________
consensus             AAATAATTTACAGCTAATATTTTTCTTGGCACTCTGATGGATATGATGAAATTCAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035H14+          TGGAGGAGAGAATCAGAGAGT                                       
rJMFF015J20+          TGGAGGAGAGAATCAGAGAGTTGACATTTATAAAATGAACATATTCTTTTGCAGTTTATT
                      ____________________________________________________________
consensus             TGGAGGAGAGAATCAGAGAGTTGACATTTATAAAATGAACATATTCTTTTGCAGTTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF015J20+          GATGGTTTCTTTAGTTGGGACTATTAAAGCTAGAAAGAATGATATTCTGTTTGATTGCAT
                      ____________________________________________________________
consensus             GATGGTTTCTTTAGTTGGGACTATTAAAGCTAGAAAGAATGATATTCTGTTTGATTGCAT