| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004L11 | Sequence | 563 | 005020 (29) | emb|CDP11417.1| | 1e-67 | unnamed protein product [Coffea canephora] | 203 | 009640 (8) | |||
| JMFF007N05 | Sequence | 563 | 005020 (29) | emb|CDP11417.1| | 1e-67 | unnamed protein product [Coffea canephora] | 175 | 009640 (8) | |||
| JMFF010L23 | Sequence | 546 | 005020 (29) | emb|CDP11417.1| | 4e-69 | unnamed protein product [Coffea canephora] | 293 | 009640 (8) | |||
| JMFF037I19 | Sequence | 196 | 009640 (8) | ||||||||
| JMFF041E08 | Sequence | 634 | 005020 (29) | ref|XP_009782822.1| | 7e-76 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia | 546 | 009640 (8) | gb|EYU36833.1| | 2e-27 | hypothetical protein MIMGU_mgv1a000540mg [Erythranthe guttata] |
| JMFF044A16 | Sequence | 658 | 005020 (29) | emb|CDP11417.1| | 3e-64 | unnamed protein product [Coffea canephora] | 530 | 009640 (8) | ref|XP_009782822.1| | 4e-20 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia |
| JMSF006K12 | Sequence | 407 | 005020 (29) | ref|XP_002265955.1| | 3e-54 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] [Vitis vinife | 138 | 009640 (8) | |||
| JMSF010I19 | Sequence | 306 | 005020 (29) | emb|CDP11417.1| | 7e-20 | unnamed protein product [Coffea canephora] | 228 | 009640 (8) | |||
This contig is upended
. : . : . : . : . : . :
rJMFF041E08+ CCTTATGGGTCATTGTCCATCTCTACCCTTTCCTCAAAGGTATGATGGGGAAGCAAAAC
rJMFF044A16+ TACCCTTTCCTCAAAGGTATGATGGGGAAGCAAAAC
____________________________________________________________
consensus CCTTATGGGTCATTGTCCATCTCTACCCTTTCCTCAAAGGTATGATGGGGAAGCAAAAC
. : . : . : . : . : . :
rJMFF041E08+ GGGGTTCCGACCATTATAGTAGTGTGGTCCATTCTCCTCGCCTCCATCTTCTCGCTCCTA
rJMFF044A16+ GGGGTTCCGACCATTATAGTAGGGTGGTCCATTCTCCTCGCCTCCATTTTTTCGCTCCTA
____________________________________________________________
consensus GGGGTTCCGACCATTATAGTAGTGTGGTCCATTCTCCTCGCCTCCATTTTTTCGCTCCTA
. : . : . : . : . : . :
rJMFF041E08+ TGGGTCCGAATCAACCCCTTCGTCTCGAGGGACGGGCTCGTGCTAGAAGTATGCGGGTTG
rJMFF044A16+ TGGGTCCGAATCAACCCCTTTTTTTTGAGAGACGGGCTTGTGCTAGAAGTATGCGGGTTG
____________________________________________________________
consensus TGGGTCCGAATCAACCCCTTTTTTTTGAGGGACGGGCTTGTGCTAGAAGTATGCGGGTTG
. : . : . : . : . : . :
rJMFF041E08+ GATTGCGAGTAAATGACGCCTTAGACGGCTCGAGTGAGTGTGGAAAGATTGTTTGGAACA
rJMFF044A16+ GATTGCGAGTAAATGACGCCTTAGACGGCTCGAGTGAGTGTGGAAAGATTTTTTGGAACA
____________________________________________________________
consensus GATTGCGAGTAAATGACGCCTTAGACGGCTCGAGTGAGTGTGGAAAGATTTTTTGGAACA
. : . : . : . : . : . :
rJMFF041E08+ GAGCCTAGCCGAGGAGCCGCCATGGAGAAGATCAAAGCATACATAATAGGTGTTTGATTG
rJMFF044A16+ GAGCCTAGCCGAGGAGCCCCCATGGGGAAGATCAAAGCATCCATTATAGGTGTTTGATTT
____________________________________________________________
consensus GAGCCTAGCCGAGGAGCCGCCATGGGGAAGATCAAAGCATCCATTATAGGTGTTTGATTT
. : . : . : . : . : . :
rJMFF041E08+ TTGAAGAAGAAGAGGGAAAGAGGGCTCTGGTGGTGTTGTGTACAGGACACATTCAATCTT
rJMFF044A16+ TTGAAGAAGAAGAGGGAAAAAGGGCTTTGGTGGTGTTGTGTTCAGGACCCATTCAATCTT
____________________________________________________________
consensus TTGAAGAAGAAGAGGGAAAGAGGGCTTTGGTGGTGTTGTGTTCAGGACCCATTCAATCTT
. : . : . : . : . : . :
rJMFF004L11+ TTTTTTTTTTTTTTTGGTTTATGGAAAGCTTTTTATTCATTCTTTAGATA
rJMFF007N05+ TTTTTTTTTTTTTTTTGGTNCATGGAAAGCTTTTTATTCATTCTNTAGATA
rJMFF041E08+ TGGTTTTGTTTTTTTTTTTTTTTTTGGTTTATGGAAAGCTTTTTATTCATTCTTTAGATA
rJMFF044A16+ TGGTTTT-GTTTTTTTTTTTTTTTTGGTTTATGGAAAGCTTTTTATTCATTCTTTAGATA
rJMSF006K12+ GATA
rJMSF010I19+ TTTTTTTTTTTTTTTGGTNTATGGAAAGCTTTTTATTCATTCTTTAGATA
rJMFF037I19+ TTTTTTTTTTTTTTGGTTCTATGGAAAGCTTTTTATTCATTCTNTAGATA
rJMFF010L23+ TTTTTTTTTTTTTTTTTGGTTTATGGAAAGCTTTTTATTCATTCTTTAGATA
____________________________________________________________
consensus TGGTTTTGTTTTTTTTTTTTTTTTTGGTTTATGGAAAGCTTTTTATTCATTCTTTAGATA
. : . : . : . : . : . :
rJMFF004L11+ CAGTCTGGGATTTGTGGGTTTNTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
rJMFF007N05+ CAGTCNGGGATTTGTGGGNTTNTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
rJMFF041E08+ CAGTCTGGGATTTGTGGGTTTCTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
rJMFF044A16+ CAGTTTGGGATTTGTGGGTTTTTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
rJMSF006K12+ CAGTCTGGGATTTGTGGGTTTCTGCAAAATGGGGTATGTGTNGTCCCAAANGGAACATAA
rJMSF010I19+ CAGTCTGGGATTTGTGGGTTTCTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
rJMFF037I19+ CAGTCTGGGATTTGTGGGTTTNTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
rJMFF010L23+ CAGTCTGGGATTTGTGGGTTTCTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
____________________________________________________________
consensus CAGTCTGGGATTTGTGGGTTTCTGCAAAA-GGGGTATGTGTAGTCCCAAAAGGAACATAA
. : . : . : . : . : . :
rJMFF004L11+ ACTTTATAGGCCATCATCATAAA
rJMFF007N05+ ACTTTATAGGCCATCATCATAAANTNTTGTCTCTCTCT
rJMFF041E08+ ACTTTATAGGCCATCATCATAAATTATTGTCTCTCTCTATCTCTCAATAAACAACCTTCC
rJMFF044A16+ ACTTTATAGGCCATCATCATAAATTATTGTCTCTCTCTATCTCTCAATAAACAACCTTCC
rJMSF006K12+ ACTTTATAGGCCATCATCATAAA
rJMSF010I19+ ACTTTATAGGCCATCATCATAAATTATTGTCTCTCTCTATCTCTCAATAAACANCCTTCC
rJMFF037I19+ ACTTTATAGGCCATCATCATAAANTNTTGTCTCTCTCT
rJMFF010L23+ ACTTTATAGGCCATCATCATAAATTATTGTCTCTCTCTATCTCTCAATAAACAACCTTCC
____________________________________________________________
consensus ACTTTATAGGCCATCATCATAAATTATTGTCTCTCTCTATCTCTCAATAAACAACCTTCC
. : . : . : . : . : . :
rJMSF010I19+ AGNGTATTTTTCCAGNGTAATTCAGAACATNTTGTTTGCCTCTT
rJMFF010L23+ AGTGTATTTTT-CAGTGTAATTCAGAACATTTTGTTTGCCTCTTTTCATATTACCTCTTC
____________________________________________________________
consensus AGTGTATTTTTCCAGTGTAATTCAGAACATTTTGTTTGCCTCTTTTCATATTACCTCTTC
. : . : . : . : . : . :
rJMFF010L23+ AAGACAACATTTTTTTTGGGTATTATTTTGTAANGAACATGCATTAAGGTTTAAGGAACC
____________________________________________________________
consensus AAGACAACATTTTTTTTGGGTATTATTTTGTAANGAACATGCATTAAGGTTTAAGGAACC