Contig 009639:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010K14Sequence593009639 (4)emb|CDP03613.1|2e-58unnamed protein product [Coffea canephora]557009639 (4)emb|CDP03613.1|7e-59unnamed protein product [Coffea canephora]
JMFN011P09Sequence593009639 (4)ref|XP_002302121.1|2e-55small nuclear ribonucleoprotein D1 [Populus trichocarpa] gb|ABK93236.1| unknown
JMFN046J17Sequence616009639 (4)emb|CDP03613.1|2e-58unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+                               CAGATTATCATGTTTTTGACCCACTAAGTTCTAATTACTA
                      ____________________________________________________________
consensus                                 CAGATTATCATGTTTTTGACCCACTAAGTTCTAATTACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           ATTAGCAAAGCGATATACTAAAGAAAATCTCATAATCCACTCAAAGTAGTAACAGATTGG
                      ____________________________________________________________
consensus             ATTAGCAAAGCGATATACTAAAGAAAATCTCATAATCCACTCAAAGTAGTAACAGATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           CATCCATTCCATGCTATTAAACTACATAACGAGATAGACTCTCCATCATGAATACATGCG
                      ____________________________________________________________
consensus             CATCCATTCCATGCTATTAAACTACATAACGAGATAGACTCTCCATCATGAATACATGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           TCTACATAAACAGATGTTGTCACAAAATGGGGAATGACTTAAAGGCCTTTACCGGCCTCG
JMFN011P09+                                                                  CCTCG
JMFF010K14+                                                                  CCTCG
rJMFF010K14-                                                                 CCTCG
                      ____________________________________________________________
consensus             TCTACATAAACAGATGTTGTCACAAAATGGGGAATGACTTAAAGGCCTTTACCGGCCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           CCCACGGCCACGCCCGCGTCCACGGCCCCGACCCCGGCCCATTGCCCTTCCAGCAGTTGG
JMFN011P09+           CCCACGTCCACGCCCGCGCCCTCGTCCTCGGCCCCTCCCCATTGCCCGTCCAGCAGTGGG
JMFF010K14+           CCCACGGCCACGCCCGCGTCCACGGCCCCGACCCCGGCCCATTGCCCTTCCAGCAGTTGG
rJMFF010K14-          CCCACGGCCACGCCCGCGTCCACGGCCCCGACCCCGGCCCATTGCCCTTCCAGCAGTTGG
                      ____________________________________________________________
consensus             CCCACGGCCACGCCCGCGTCCACGGCCCCGACCCCGGCCCATTGCCCTTCCAGCAGTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           CTTCTTAGGCTTCACTCTAGGAGTTTCTTCCACTAGCAAAGTCTCGAGATTTAAGCTATC
JMFN011P09+           CTTTTTTGGCTTCACCCTAGGTGTTTCTTCCACCAGCAAAGTCTCGAGATTTAAACTGTC
JMFF010K14+           CTTCTTAGGCTTCACTCTAGGAGTTTCTTCCACTAGCAAAGTCTCGAGATTTAAGCTATC
rJMFF010K14-          CTTCTTAGGCTTCACTCTAGGAGTTTCTTCCACTAGCAAAGTCTCGAGATTTAAGCTATC
                      ____________________________________________________________
consensus             CTTCTTAGGCTTCACTCTAGGAGTTTCTTCCACTAGCAAAGTCTCGAGATTTAAGCTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           GGGGAGGATGTAATAGCGAATGTTGTTGCCCCTTACACTCAGGTGATCCATAGTCACAGG
JMFN011P09+           CGGCAGTATGTAATAACGAATGTTGTTACCCCTCACACTCAGGTGATCCATTGTCACGGG
JMFF010K14+           GGGGAGGATGTAATAGCGAATGTTGTTGCCCCTTACACTCAGGTGATCCATAGTCACAGG
rJMFF010K14-          GGGGAGGATGTAATAGCGAATGTTGTTGCCCCTTACACTCAGGTGATCCATAGTCACAGG
                      ____________________________________________________________
consensus             GGGGAGGATGTAATAGCGAATGTTGTTGCCCCTTACACTCAGGTGATCCATAGTCACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           ATTTTTGCCTTTTGGAGTAAGCTTTACTGTCTTCAAGTGTGTGTTCATGCTGACATCAAC
JMFN011P09+           ATTCTTCCCTTTTGGTGTAAGCTTTACAGTCTTCAAGTGTGTGTTCATGCTGACATCAAC
JMFF010K14+           ATTTTTGCCTTTTGGAGTAAGCTTTACTGTCTTCAAGTGTGTGTTCATGCTGACATCAAC
rJMFF010K14-          ATTTTTGCCTTTTGGAGTAAGCTTTACTGTCTTCAAGTGTGTGTTCATGCTGACATCAAC
                      ____________________________________________________________
consensus             ATTTTTGCCTTTTGGAGTAAGCTTTACTGTCTTCAAGTGTGTGTTCATGCTGACATCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           ACCTGTAATGGTTCCGTGAACAACGGTTCCGTTCTTGAGCTCAATCGAGACCGTCTCATT
JMFN011P09+           ACCAGTGATAGTTCCATGAACGACAGTGCCGTTTTTGAGCTCGATGGAGACAGTCTCATT
JMFF010K14+           ACCTGTAATGGTTCCGTGAACAACGGTTCCGTTCTTGAGCTCAATCGAGACCGTCTCATT
rJMFF010K14-          ACCTGTAATGGTTCCGTGAACAACGGTTCCGTTCTTGAGCTCAATCGAGACCGTCTCATT
                      ____________________________________________________________
consensus             ACCTGTAATGGTTCCGTGAACAACGGTTCCGTTCTTGAGCTCAATCGAGACCGTCTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN046J17+           GTTCAATTTCATCAAAAATCTGACAAGCTTCATCGTTGAGAGAG                
JMFN011P09+           GTTCAATTTCATCAAAAACCTGACGAGCTTCATCGTTGAGAGAG                
JMFF010K14+           GTTCAATTTCATCAAAAATCTGACAAGCTTCATCGTTGAGAGAG                
rJMFF010K14-          GTTCAATTTCATCAAAAATCTGACAAGCTTCATCGTTGAGAGAGTAAGAACAGAGAAGCT
                      ____________________________________________________________
consensus             GTTCAATTTCATCAAAAATCTGACAAGCTTCATCGTTGAGAGAGTAAGAACAGAGAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010K14-          AGGGCTATGTCGAAGCGATAGAGCGCAAAAGCCTCTTCAGTCTGGAAGACGGGGGTTTTT
                      ____________________________________________________________
consensus             AGGGCTATGTCGAAGCGATAGAGCGCAAAAGCCTCTTCAGTCTGGAAGACGGGGGTTTTT