clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF009L24 | Sequence | 431 | 006503 (11) | ref|XP_009601532.1| | 6e-53 | PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana tomentos | 713 | 009632 (4) | gb|AIF28348.1| | 3e-31 | PIN-like protein, partial [Strelitzia reginae] |
JMSF015G02 | Sequence | 232 | 006503 (11) | ref|NP_564189.1| | 6e-08 | auxin efflux carrier component 7 [Arabidopsis thaliana] gb|AAK96547.1| At1g23080 | 732 | 009632 (4) | ref|XP_002530487.1| | 8e-43 | hypothetical protein RCOM_0566910 [Ricinus communis] gb|EEF31910.1| hypothetical |
JMSF017E02 | Sequence | 237 | 006503 (11) | ref|XP_009601548.1| | 4e-10 | PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb| | 674 | 009632 (4) | gb|AIF28348.1| | 3e-49 | PIN-like protein, partial [Strelitzia reginae] |
JMSF021K08 | Sequence | 676 | 006503 (11) | gb|AGG79243.1| | 8e-112 | auxin efflux facilitator PIN3b [Nicotiana tabacum] | 720 | 009632 (4) | ref|XP_002530487.1| | 9e-42 | hypothetical protein RCOM_0566910 [Ricinus communis] gb|EEF31910.1| hypothetical |
This contig is upended
. : . : . : . : . : . :
rJMSF017E02+ AAGATAATTTCATGTGGGAACACGGTGGCGTCCTTTGCCATGGCGGTTAGGT
rJMSF021K08+ TTTGCCATGGCGGTTAGGT
rJMSF015G02+ GTGGCGTCCTTTGCCATGGCGGTTAGGT
____________________________________________________________
consensus AAGATAATTTCATGTGGGAACACGGTGGCGTCCTTTGCCATGGCGGTTAGGT
. : . : . : . : . : . :
rJMSF017E02+ TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMSF021K08+ TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMSF015G02+ TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
rJMFF009L24+ CCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
____________________________________________________________
consensus TCCTGACGGGCCCAGCAGTTATGGCCGCTGCTTCCATTGCTGTTGGTCTTCGTGGTACCC
. : . : . : . : . : . :
rJMSF017E02+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMSF021K08+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMSF015G02+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
rJMFF009L24+ TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
____________________________________________________________
consensus TCCTCCATGTTGCCATTGTGCAGGCAGCATTGCCACAAGGGATTGTCCCATTTGTGTTTG
. : . : . : . : . : . :
rJMSF017E02+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMSF021K08+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMSF015G02+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
rJMFF009L24+ CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
____________________________________________________________
consensus CTAAAGAGTACAATGTCCATCCAGCTATTCTCAGTACTGCAGTTATTTTCGGAATGCTGA
. : . : . : . : . : . :
rJMSF017E02+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMSF021K08+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMSF015G02+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
rJMFF009L24+ TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
____________________________________________________________
consensus TCGCATTGCCAATCACGTTAGTGTACTACATTATTCTTGGAGTATAGATACCCGAACACG
. : . : . : . : . : . :
rJMSF017E02+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
rJMSF021K08+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
rJMSF015G02+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATT-TGCTGGAGATGGGTCATGTATCA
rJMFF009L24+ ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
____________________________________________________________
consensus ACGGGACGTGAGGGCAAAATGGGAAAGATTTTGATTGTGCTGGAGATGGGTCATGTATCA
. : . : . : . : . : . :
rJMSF017E02+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMSF021K08+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMSF015G02+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
rJMFF009L24+ ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
____________________________________________________________
consensus ATAGCTGCATTGTGATATACTACTAACAAGCTAGCATGTGGATTTGGGAGGACCTAAAAA
. : . : . : . : . : . :
rJMSF017E02+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMSF021K08+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMSF015G02+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
rJMFF009L24+ GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
____________________________________________________________
consensus GAAATAATTAAAATTAGTATAATTAATTATATATATGCATGTAATTTCTCCCAAACCCAT
. : . : . : . : . : . :
rJMSF017E02+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMSF021K08+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMSF015G02+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
rJMFF009L24+ GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
____________________________________________________________
consensus GGAGATAAAAAGTTGACTTAGTTGGAAGGGTTTGACGACGACGTACGGCCGTGATTGAAG
. : . : . : . : . : . :
rJMSF017E02+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMSF021K08+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMSF015G02+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
rJMFF009L24+ GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
____________________________________________________________
consensus GATGATTTGCTCCATTGAGGTAGGCAATGTGATCTTGATTTTCACAAATGGAGGAAAGCC
. : . : . : . : . : . :
rJMSF017E02+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAANGA
rJMSF021K08+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
rJMSF015G02+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
rJMFF009L24+ AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAA--AGAGCAAAACAAGGAGGCAAAAGA
____________________________________________________________
consensus AAAGGGGGGCTAGTCTAGAGGAAAGGGGACAAAAGAAGAGCAAAACAAGGAGGCAAAAGA
. : . : . : . : . : . :
rJMSF017E02+ CTGATGTACTNTGGGTTATATT
rJMSF021K08+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
rJMSF015G02+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
rJMFF009L24+ GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
____________________________________________________________
consensus GTGATGTACTATGGGTTATATTCTTTTTTCTTTTCTTTATTTTATTTTCTTTTCATAGCT
. : . : . : . : . : . :
rJMSF021K08+ GGTACGCGTGTAAAGTGTCGATT
rJMSF015G02+ GGTACGCGTGTAAAGTGTCGA-TTGAACAAAAAAAAATCGTC
rJMFF009L24+ GGTACGCGTGTAAAGTGTCGATTTGAACAAAAAAAAATCGTCTATCTAGTTATCGAAAAT
____________________________________________________________
consensus GGTACGCGTGTAAAGTGTCGATTTGAACAAAAAAAAATCGTCTATCTAGTTATCGAAAAT