Contig 009627:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008I03Sequence744009627 (3)ref|XP_008466945.1|4e-25PREDICTED: HMG-Y-related protein A [Cucumis melo]
JMSF052I06Sequence668009627 (3)ref|XP_008221436.1|2e-29PREDICTED: HMG-Y-related protein B-like [Prunus mume]868009627 (3)ref|XP_008221436.1|7e-29PREDICTED: HMG-Y-related protein B-like [Prunus mume]

Alignment

This contig is upended


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JMSF052I06-                                  GGCTTACATCCAAACTTTCTAAATTCGTCTTCTCTCC
                      ____________________________________________________________
consensus                                    GGCTTACATCCAAACTTTCTAAATTCGTCTTCTCTCC
 
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JMSF052I06-           TCTCCCGCTCTCCAATTTCAATTTTTCAGCGCTTTTTCTCTCTCTCTTTACGTCACTTTC
rJMSF052I06+                                TTTTCAGCGCTTTTTCTCTCTCTCTTTACGTCACTTTC
                      ____________________________________________________________
consensus             TCTCCCGCTCTCCAATTTCAATTTTTCAGCGCTTTTTCTCTCTCTCTTTACGTCACTTTC
 
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JMSF052I06-           TATCTCAAGCTTTGTTTATGGCTTCTCCCGACGATAATCCCGTTGATCCTCCCCCGCCGT
rJMSF052I06+          TATCTCAAGCTTTGTTTATGGCTTCTCCCGACGATAATCCCGTTGATCCTCCCCCGCCGT
                      ____________________________________________________________
consensus             TATCTCAAGCTTTGTTTATGGCTTCTCCCGACGATAATCCCGTTGATCCTCCCCCGCCGT
 
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JMSF052I06-           CGTCTAATCAGCCGCCTCCCACTCTCCCGCTTTACCCTGAGATGATAATGGCGGCGATTG
rJMSF052I06+          CGTCTAATCAGCCGCCTCCCACTCTCCCGCTTTACCCTGAGATGATAATGGCGGCGATTG
rJMFF008I03+                                              CTGAGATGATAATGGCGGCGATTG
                      ____________________________________________________________
consensus             CGTCTAATCAGCCGCCTCCCACTCTCCCGCTTTACCCTGAGATGATAATGGCGGCGATTG
 
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JMSF052I06-           AGGAGCTGAACCACAAGAATGGGTCGAACAAATCGACCATTGCGAGAAAAATCGAGGCGA
rJMSF052I06+          AGGAGCTGAACCACAAGAATGGGTCGAACAAATCGACCATTGCGAGAAAAATCGAGGCGA
rJMFF008I03+          AGGAGCTGANCCACAAGAATGGGTCGAACAAATCGACCATTGCGAGAAAAATCGAGGCGA
                      ____________________________________________________________
consensus             AGGAGCTGAACCACAAGAATGGGTCGAACAAATCGACCATTGCGAGAAAAATCGAGGCGA
 
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JMSF052I06-           CGTACGGCGCCTTGCCGCAGGCTTTTCACACACTGTTGTCTCACCATCTGAACAAGATGA
rJMSF052I06+          CGTACGGCGCCTTGCCGCAGGCTTTTCACACACTGTTGTCTCACCATCTGAACAAGATGA
rJMFF008I03+          CGTACGGCGCCTTGCCGCAGGCTTTTCACACACTGTTGTCTCACCATCTGAACAAGATGA
                      ____________________________________________________________
consensus             CGTACGGCGCCTTGCCGCAGGCTTTTCACACACTGTTGTCTCACCATCTGAACAAGATGA
 
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JMSF052I06-           GGCAGAGCGGGCAGCTCCTTTTTGTCAAGAACAACTACATGAAACCCGATCCCAATGCTC
rJMSF052I06+          GGCAGAGCGGGCAGCTCCTTTTTGTCAAGAACAACTACATGAAACCCGATCCCAATGCTC
rJMFF008I03+          GGCAGAGCGGGCAGCTCCTTTTTGTCAAGAACAACTACATGAAACCCGATCCCAATGCTC
                      ____________________________________________________________
consensus             GGCAGAGCGGGCAGCTCCTTTTTGTCAAGAACAACTACATGAAACCCGATCCCAATGCTC
 
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JMSF052I06-           CGCAGCTTCTCAGTCGCGGTCGCGGCCGTCCTCCGAAGCCCAAAGCTCCGCCGCCGCCGG
rJMSF052I06+          CGCAGCTTCTCAGTCGCGGTCGCGGCCGTCCTCCGAAGCCCAAAGCTCCGCCGCCGCCGG
rJMFF008I03+          CGCAGCTTCTCAGTCGCGGTCGCGGCCGTCCTCCGAAGCCCAAAGCTCCGCCGCCGCCGG
                      ____________________________________________________________
consensus             CGCAGCTTCTCAGTCGCGGTCGCGGCCGTCCTCCGAAGCCCAAAGCTCCGCCGCCGCCGG
 
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JMSF052I06-           GGTACGTTCCTCCTACCCCTCGGCCGCGTGGCAGGCCGCCGAAAGCCAGGGATCCGCTTG
rJMSF052I06+          GGTACGTTCCTCCTACCCCTCGGCCGCGTGGCAGGCCGCCGAAAGCCAGGGATCCGCTTG
rJMFF008I03+          GGTACGTTCCTCCTACCCCTCGGCCGCGTGGCAGGCCGCCGAAAGCCAGGGATCCGCTTG
                      ____________________________________________________________
consensus             GGTACGTTCCTCCTACCCCTCGGCCGCGTGGCAGGCCGCCGAAAGCCAGGGATCCGCTTG
 
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JMSF052I06-           CTCCGGCCGCGTCGCCCAAGAAGAAAAGTGCGGAATCCGGTGGCACTGGGAGGAAGCGGG
rJMSF052I06+          CTCCGGCCGCGTCGCCCAAGAAGAAAAGTGCGGAATCCGGTGGCACTGGGAGGAAGCGGG
rJMFF008I03+          CTCCGGCCGCGTCGCCCAAGAAGAAAAGTGCGGAATCCGGTGGCACTGGGAGGAAGCGGG
                      ____________________________________________________________
consensus             CTCCGGCCGCGTCGCCCAAGAAGAAAAGTGCGGAATCCGGTGGCACTGGGAGGAAGCGGG
 
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JMSF052I06-           GAAGGCCTCGAAAGTACCCTAAAACTAGCGTTACCCCCGCCGTGGCGGCTCCCTCTAGTG
rJMSF052I06+          GAAGGCCTCGAAAGTACCCTAAAACTAGCGTTACCCCCGCCGTGGCGGCTCCCTCTAGTG
rJMFF008I03+          GAAGGCCTCGAAAGTACCCTAAAACTAGCGTTACCCCCGCCGTGGCGGCTCCCTCTAGTG
                      ____________________________________________________________
consensus             GAAGGCCTCGAAAGTACCCTAAAACTAGCGTTACCCCCGCCGTGGCGGCTCCCTCTAGTG
 
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JMSF052I06-           ATGCCCCGCGACGGAAANGGCGGCCGCCTAA                             
rJMSF052I06+          ATGCCCCGCGACGGAGAGGGCGGCCGCCTAAGGTGAAGCCGGCCGTGGCTGCACCGGTAG
rJMFF008I03+          ATGCCCCGCGACGGAGAGGGCGGCCGCCTAAGGTGAAGCCGGCCGTGGCTGCACCGGTAG
                      ____________________________________________________________
consensus             ATGCCCCGCGACGGAGAGGGCGGCCGCCTAAGGTGAAGCCGGCCGTGGCTGCACCGGTAG
 
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rJMSF052I06+          GAGCTTAATAATGATAATCAGAAATAATGATAATAGTTTTAGGAGTGTAGTGCTGATCAA
rJMFF008I03+          GAGCTTAATAATGATAATCAGAAATAATGATAATAGTTTTAGGAGTGTAGTGCTGATCAA
                      ____________________________________________________________
consensus             GAGCTTAATAATGATAATCAGAAATAATGATAATAGTTTTAGGAGTGTAGTGCTGATCAA
 
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rJMSF052I06+          TTATCGTCTTCATTTTCAAGTATAACATTTTTCTATATTTCACGTTTTATTCCTTTGAAA
rJMFF008I03+          TTATCGTCTTCATTTTCAAGTATAACATTTTTCTATATTTCACGTTTTATTCCTTTGAAA
                      ____________________________________________________________
consensus             TTATCGTCTTCATTTTCAAGTATAACATTTTTCTATATTTCACGTTTTATTCCTTTGAAA
 
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rJMSF052I06+          TCTGGGATTCTGGGTTGGTTAATTTGATGATAGGTTTTCCAGTTGTGCTGTTGTAGCTTG
rJMFF008I03+          TCTGGGATTCTGGGTTGGTTAATTTGATGATAGGTTTTCCAGTTGTGCTGTTGTAGCTTG
                      ____________________________________________________________
consensus             TCTGGGATTCTGGGTTGGTTAATTTGATGATAGGTTTTCCAGTTGTGCTGTTGTAGCTTG
 
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rJMSF052I06+          TAACTGTGAACTGTTTACTGTAATTTGGGGCAATGTA                       
rJMFF008I03+          TAACTGTGAACTGTTTACTGTAATTTGGGGCAATGTAAATCTTCAATGAGAGGAAATGGA
                      ____________________________________________________________
consensus             TAACTGTGAACTGTTTACTGTAATTTGGGGCAATGTAAATCTTCAATGAGAGGAAATGGA