Contig 009622:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E16Sequence655003845 (4)emb|CDP09102.1|2e-42unnamed protein product [Coffea canephora]780009622 (3)emb|CDP09102.1|7e-56unnamed protein product [Coffea canephora]
JMSF036O24Sequence220003845 (4)570009622 (3)ref|XP_009622244.1|4e-30PREDICTED: transcription initiation factor IIA large subunit {ECO:0000250|UniPr
JMSF042N12Sequence794003845 (4)emb|CDP09102.1|2e-58unnamed protein product [Coffea canephora]735009622 (3)emb|CDP09102.1|2e-50unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF042N12+                                                      GAGTGTTCAAGGTAGT
rJMFF007E16+          CCACAGCAAGATGGAGCTGGAGATGCATTATATTATGATCCAAAGAGTGTTCAAGGTAGT
                      ____________________________________________________________
consensus             CCACAGCAAGATGGAGCTGGAGATGCATTATATTATGATCCAAAGAGTGTTCAAGGTAGT
 
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rJMSF042N12+          GCTATTCAGCATGGATCTGTTGCTGCTGGGAAGGAGATAGTGATAGAAGGGCTAAGTATT
rJMFF007E16+          GCTATTCAGCATGGATCTGTTGCTGCTGGGAAGGAGATAGTGATAGAAGGGCTAAGTATT
                      ____________________________________________________________
consensus             GCTATTCAGCATGGATCTGTTGCTGCTGGGAAGGAGATAGTGATAGAAGGGCTAAGTATT
 
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rJMSF042N12+          TCAAGAATCCCTCAGCTGGATGGTCCAATTCCTGATCCTTATGATGAAATGCTCTCAACA
rJMFF007E16+          TCAAGAATCCCTCAGCTGGATGGTCCAATTCCTGATCCTTATGATGAAATGCTCTCAACA
                      ____________________________________________________________
consensus             TCAAGAATCCCTCAGCTGGATGGTCCAATTCCTGATCCTTATGATGAAATGCTCTCAACA
 
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rJMSF036O24+                       ATTATCAAGGAACTGTCAANGAAGACTACAATGTAGCAAATACACCT
rJMSF042N12+          CCCAATATCTATAATTATCAAGGAACTGTCAATGAAGACTACAATGTAGCAAATACACCT
rJMFF007E16+          CCCAATATCTATAATTATCAAGGAACTGTCAATGAAGACTACAATGTAGCAAATACACCT
                      ____________________________________________________________
consensus             CCCAATATCTATAATTATCAAGGAACTGTCAATGAAGACTACAATGTAGCAAATACACCT
 
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rJMSF036O24+          GCACCAGAAATGCAAGCACCTACTCCTGCTCCAGTCCCACAAAATGATGTCGTAGATGAC
rJMSF042N12+          GCACCAGAAATGCAAGCACCTACTCCTGCTCCAGTCCCACAAAATGATGTCGTAGATGAC
rJMFF007E16+          GCACCAGAAATGCAAGCACCTACTCCTGCTCCAGTCCCACAAAATGATGTCGTAGATGAC
                      ____________________________________________________________
consensus             GCACCAGAAATGCAAGCACCTACTCCTGCTCCAGTCCCACAAAATGATGTCGTAGATGAC
 
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rJMSF036O24+          GATGATGAAGAGCCCTTGAATGAAAATGATGATGATGATTTGGATGATGTAGACCAAGGA
rJMSF042N12+          GATGATGAAGAGCCCTTGAATGAAAATGATGATGATGATTTGGATGATGTAGACCAAGGA
rJMFF007E16+          GATGATGAAGAGCCCTTGAATGAAAATGATGATGATGATTTGGATGATGTAGACCAAGGA
                      ____________________________________________________________
consensus             GATGATGAAGAGCCCTTGAATGAAAATGATGATGATGATTTGGATGATGTAGACCAAGGA
 
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rJMSF036O24+          GAGGATCTAAACACAGCACATCTAGTTTTGGCTCAGTTTGACAAGGTTACCCGTACCAAG
rJMSF042N12+          GAGGATCTAAACACAGCACATCTAGTTTTGGCTCAGTTTGACAAGGTTACCCGTACCAAG
rJMFF007E16+          GAGGATCTAAACACAGCACATCTAGTTTTGGCTCAGTTTGACAAGGTTACCCGTACCAAG
                      ____________________________________________________________
consensus             GAGGATCTAAACACAGCACATCTAGTTTTGGCTCAGTTTGACAAGGTTACCCGTACCAAG
 
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rJMSF036O24+          AGCAGGTGGAAATGCACTCTAAAGGACGGTATAATGCATATAAATAATAAAGATATACTC
rJMSF042N12+          AGCAGGTGGAAATGCACTCTAAAGGACGGTATAATGCATATAAATAATAAAGATATACTC
rJMFF007E16+          AGCAGGTGGAAATGCACTCTAAAGGACGGTATAATGCATATAAATAATAAAGATATACTC
                      ____________________________________________________________
consensus             AGCAGGTGGAAATGCACTCTAAAGGACGGTATAATGCATATAAATAATAAAGATATACTC
 
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rJMSF036O24+          TTTAATAAGGCAACAGGAGAGTTTGACTTCTGATTCTGTCAAAAGAAATCCTTCTTGCTA
rJMSF042N12+          TTTAATAAGGCAACAGGAGAGTTTGACTTCTGATTCTGTCAAAAGAAATCCTTCTTGCTA
rJMFF007E16+          TTTAATAAGGCAACAGGAGAGTTTGACTTCTGATTCTGTCAAAAGAAATCCTTCTTGCTA
                      ____________________________________________________________
consensus             TTTAATAAGGCAACAGGAGAGTTTGACTTCTGATTCTGTCAAAAGAAATCCTTCTTGCTA
 
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rJMSF036O24+          AAAGAGCGCTGAGTTTGAAGTGAAGTGAAAAGCAAGAATGCTTAGGTATTCTTATAATTG
rJMSF042N12+          AAAGAGCGCTGAGTTTGAAGTGAAGTGAAAAGCAAGAATGCTTAGGTATTCTTATAATTG
rJMFF007E16+          AAAGAGCGCTGAGTTTGAAGTGAAGTGAAAAGCAAGAATGCTTAGGTATTCTTATAATTG
                      ____________________________________________________________
consensus             AAAGAGCGCTGAGTTTGAAGTGAAGTGAAAAGCAAGAATGCTTAGGTATTCTTATAATTG
 
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rJMSF036O24+          CTCCTTTTTAATTAAGTAGACCGACCGACCGACCCTCAAGCAAATTGCCTAATATGTGTG
rJMSF042N12+          CTCCTTTTTAATTAAGTAGACCGACCGACCGACCCTCAAGCAAATTGCCTAATATGTGTG
rJMFF007E16+          CTCCTTTTTAATTAAGTAGACCGACCGACCGACCCTCAAGCAAATTGCCTAATATGTGTG
                      ____________________________________________________________
consensus             CTCCTTTTTAATTAAGTAGACCGACCGACCGACCCTCAAGCAAATTGCCTAATATGTGTG
 
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rJMSF036O24+          GGACTCTGATTAGTTGCTGTACATAAAGGGGAGAGCTTTTTGGCCATAAATTGAGACTCA
rJMSF042N12+          GGACTCTGATTAGTTGCTGTACATAAAGGGGAGAGCTTTTTGGCCATAAATTGAGACTCA
rJMFF007E16+          GGACTCTGATTAGTTGCTGTACATAAAGGGGAGAGCTTTTTGGCCATAAATTGAGACTCA
                      ____________________________________________________________
consensus             GGACTCTGATTAGTTGCTGTACATAAAGGGGAGAGCTTTTTGGCCATAAATTGAGACTCA
 
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rJMSF036O24+          TTTCCAGACTATATTCCGTAGACTCTGTATGTGGATTATTTTT                 
rJMSF042N12+          TTTCCAGACTATATTCCGTAGACTCTGTATGTGGATTATTTTTTGTTGATGTAA      
rJMFF007E16+          TTTCCAGACTATATTCCGTAGACTCTGTATGTGGATTATTTTTTGTTGATGTAAACCAAA
                      ____________________________________________________________
consensus             TTTCCAGACTATATTCCGTAGACTCTGTATGTGGATTATTTTTTGTTGATGTAAACCAAA