Contig 009612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M08Sequence492003179 (4)gb|ACQ44244.1|3e-77chlorophyll synthase [Nicotiana tabacum]479009612 (4)ref|XP_009376426.1|1e-51PREDICTED: chlorophyll synthase, chloroplastic-like isoform X1 [Pyrus x bretsch
JMFF005N08Sequence553003179 (4)ref|XP_009762729.1|1e-93PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris]791009612 (4)ref|XP_009606938.1|1e-85PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]
JMFF020K13Sequence558003179 (4)ref|XP_009762729.1|2e-78PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana sylvestris]692009612 (4)ref|XP_009606938.1|6e-61PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]
JMFF025H15Sequence558003179 (4)gb|ACQ44244.1|2e-93chlorophyll synthase [Nicotiana tabacum]792009612 (4)ref|XP_009606938.1|1e-85PREDICTED: chlorophyll synthase, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF025H15+ AGCTCAAACAAAA
rJMFF005N08+ CTCAAACAAAA
                      ____________________________________________________________
consensus AGCTCAAACAAAA
 
. : . : . : . : . : . :
rJMFF025H15+ TGGATGGATTGGCAACTTTGCTTTAGGGTCGAGCTACATCAGTTTGCCTTGGTGGGCTGG
rJMFF005N08+ TGGATGGATTGGCAACTTTGCTTTAGGGTCGAGCTACATCAGTTTGCCTTGGTGGGCTGG
                      ____________________________________________________________
consensus TGGATGGATTGGCAACTTTGCTTTAGGGTCGAGCTACATCAGTTTGCCTTGGTGGGCTGG
 
. : . : . : . : . : . :
rJMFF020K13+ CCGATGTTATTGTTCTAACACTCTTGTATAGCAT
rJMFF025H15+ TCAAGCTTTGTTTGGGACCCTCACACCCGATGTTATTGTTCTAACACTCTTGTATAGCAT
rJMFF005N08+ TCAAGCTTTGTTTGGGACCCTCACACCCGATGTTATTGTTCTAACACTCTTGTATAGCAT
                      ____________________________________________________________
consensus TCAAGCTTTGTTTGGGACCCTCACACCCGATGTTATTGTTCTAACACTCTTGTATAGCAT
 
. : . : . : . : . : . :
rJMFF020K13+ TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
rJMFF005M08+ GTATTGCTATTGTAAANGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
rJMFF025H15+ TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
rJMFF005N08+ TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
                      ____________________________________________________________
consensus TGCTGGGTTGGGTATTGCTATTGTAAATGACTTCAAGAGCATTGAAGGAGATAGGGCCAT
 
. : . : . : . : . : . :
rJMFF020K13+ GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
rJMFF005M08+ GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
rJMFF025H15+ GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
rJMFF005N08+ GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
                      ____________________________________________________________
consensus GGGACTTCAGTCACTTCCCGTAGCTTTTGGCTCAGAAACTGCCAAATGGATTTGTGTTGG
 
. : . : . : . : . : . :
rJMFF020K13+ TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
rJMFF005M08+ TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTNGGGAAACCATA
rJMFF025H15+ TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
rJMFF005N08+ TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
                      ____________________________________________________________
consensus TGCTATCGACTTAACTCAATTATCAGTGGCAGGCTATCTTTTTAGTGTTGGGAAACCATA
 
. : . : . : . : . : . :
rJMFF020K13+ TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
rJMFF005M08+ TTACGCATTAGCCCTCCTAGGTCTANCAGCACCACAGATNTTTTTCCAGTTCAAATACTT
rJMFF025H15+ TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
rJMFF005N08+ TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
                      ____________________________________________________________
consensus TTACGCATTAGCCCTCCTAGGTCTAACAGCACCACAGATCTTTTTCCAGTTCAAATACTT
 
. : . : . : . : . : . :
rJMFF020K13+ CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
rJMFF005M08+ CCTAAAAGACCCCGTCAAATANGATGTGAAGTATCAGGCTAGTGCACAACCGTTTNTTGT
rJMFF025H15+ CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
rJMFF005N08+ CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
                      ____________________________________________________________
consensus CCTAAAAGACCCCGTCAAATATGATGTGAAGTATCAGGCTAGTGCACAACCGTTTCTTGT
 
. : . : . : . : . : . :
rJMFF020K13+ ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
rJMFF005M08+ ACTNGGTCTNTTAGTTTCTGCATTANCCACGAGCCATNGATCTCCAGATGCNTTNGTNAC
rJMFF025H15+ ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
rJMFF005N08+ ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
                      ____________________________________________________________
consensus ACTTGGTCTTTTAGTTACTGCATTAGCCACGAGCCATTGATCTCCAGATGCTTTCGTTAC
 
. : . : . : . : . : . :
rJMFF020K13+ AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
rJMFF005M08+ AATATCGGGAGAGATAACGCAATGTCATCATCCNGGAGGGATGAGCACTATAGTCAAAGA
rJMFF025H15+ AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
rJMFF005N08+ AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
                      ____________________________________________________________
consensus AATATCGGGAGAGATAACGCAATGTCATCATCCCGGAGGGATGAGCACTATAGTCAAAGA
 
. : . : . : . : . : . :
rJMFF020K13+ GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
rJMFF005M08+ GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGCAGGATGTGGTAAAC
rJMFF025H15+ GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
rJMFF005N08+ GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
                      ____________________________________________________________
consensus GGAAGCCATGGGAATGGAGGAGATCGATTCACTATTTTCGTGAGGTTGGATGTGGTAAAT
 
. : . : . : . : . : . :
rJMFF020K13+ TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
rJMFF005M08+ TAGGGTAAAT
rJMFF025H15+ TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
rJMFF005N08+ TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
                      ____________________________________________________________
consensus TAGGGTAAATTTATCTACATTTTTGTTCAACAGCTTTGGATCAGAGTAATTTGGTCATTT
 
. : . : . : . : . : . :
rJMFF020K13+ TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
rJMFF025H15+ TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
rJMFF005N08+ TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
                      ____________________________________________________________
consensus TTACAGTTTCCATTGTTGCCTAGAAATGGTAATTGCATGTAGGTTGAGGACCATTAGGAG
 
. : . : . : . : . : . :
rJMFF020K13+ AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATT
rJMFF025H15+ AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATT
rJMFF005N08+ AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATTTAATCAAGT
                      ____________________________________________________________
consensus AAGCTCCAGCAAGGCAAAGAGGCCCTCTAGGTTGAGCTCAACTTTTACATTTAATCAAGT