Contig 009611:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005J21Sequence488009611 (4)gb|KHN24243.1|1e-45Protein BREVIS RADIX, partial [Glycine soja]712009611 (4)ref|XP_010320065.1|4e-42PREDICTED: uncharacterized protein LOC101260719 isoform X2 [Solanum lycopersicu
JMSF008P09Sequence263017761ref|XP_009775743.1|164PREDICTED: uncharacterized protein LOC104225600 [Nicotiana sylvestris]706009611 (4)ref|XP_010320065.1|9e-44PREDICTED: uncharacterized protein LOC101260719 isoform X2 [Solanum lycopersicu
JMSF040E22Sequence284000903 (3)846009611 (4)emb|CDP18270.1|8e-66unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF005J21- TTAAGCAACACCAATACCTACA
                      ____________________________________________________________
consensus TTAAGCAACACCAATACCTACA
 
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JMFF005J21- ACGTCAGGGCTTTCGTTCTCGAAAAGCATTGCAGACAGTCTGAAGAAGAATAACGAATTG
                      ____________________________________________________________
consensus ACGTCAGGGCTTTCGTTCTCGAAAAGCATTGCAGACAGTCTGAAGAAGAATAACGAATTG
 
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JMFF005J21- CTAAATCAAGAAATTCATAAGTTGCGAGCACAGGTCGAGAACCTCAGACATCGATGCGAA
                      ____________________________________________________________
consensus CTAAATCAAGAAATTCATAAGTTGCGAGCACAGGTCGAGAACCTCAGACATCGATGCGAA
 
. : . : . : . : . : . :
JMFF005J21- CTCCAAGAATTGGATCTTCAAAAATCAACGAAAAACGCTCAGGAAGCAATGTTTCTAGCT
                      ____________________________________________________________
consensus CTCCAAGAATTGGATCTTCAAAAATCAACGAAAAACGCTCAGGAAGCAATGTTTCTAGCT
 
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JMFF005J21- GCAGAAATCTGCTAAATGTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGCT
rJMSF040E22+ GCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGCT
                      ____________________________________________________________
consensus GCAGAAATCTGCTAAATGTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTTCCCAGCT
 
. : . : . : . : . : . :
JMFF005J21- CAAAGACATGGCCGAGAGATTGCCACCGGGGACTTATGATGCCGAGAGTTTCAAGCTACC
rJMSF040E22+ CAAAGACATGGCCGAGAGATTGCCACCGGGGACTTATGATGCCGAGAGTTTCAAGCTACC
                      ____________________________________________________________
consensus CAAAGACATGGCCGAGAGATTGCCACCGGGGACTTATGATGCCGAGAGTTTCAAGCTACC
 
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JMFF005J21- TCACCTAGTTAATGGATTAGAGCCGAGCAATCTTAACTGTGGTGATTCAAACGGGGAGCG
rJMSF040E22+ TCACCTAGTTAATGGATTAGAGCCGAGCAATCTTAACTGTGGTGATTCAAACGGGGAGCA
rJMSF008P09+ TCAAACGGGGAGCA
                      ____________________________________________________________
consensus TCACCTAGTTAATGGATTAGAGCCGAGCAATCTTAACTGTGGTGATTCAAACGGGGAGCA
 
. : . : . : . : . : . :
JMFF005J21- TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
rJMSF040E22+ TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
rJMSF008P09+ TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
rJMFF005J21+ GATTTGACTCGGTTGCCAGCATAGACNCCGACGGGAATGGAGTAGGGAGTCA
                      ____________________________________________________________
consensus TCGTTCGAGATTTGACTCGGTTGCCAGCATAGACACCGACGTGAATGGAGTAGGGAGTCA
 
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JMFF005J21- CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAG
rJMSF040E22+ CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
rJMSF008P09+ CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
rJMFF005J21+ CGGGGATTTTGGAACTTACGAGGNTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
                      ____________________________________________________________
consensus CGGGGATTTTGGAACTTACGAGGCTAATCCATTCAACCAAGTTCAGGACGTTCCGACCTC
 
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rJMSF040E22+ CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATCTTCCCGAACG
rJMSF008P09+ CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATCTTCCCGAACG
rJMFF005J21+ CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATNTTCCCGAACG
                      ____________________________________________________________
consensus CAATGGCGGGGACGATCAATCGAGTGTTAGATTTCCTAAAGGAAGCAATCTTCCCGAACG
 
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rJMSF040E22+ AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTCTGCTGCTCTTGGCAA
rJMSF008P09+ AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTCTGCTGCTCTTGGCAA
rJMFF005J21+ AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTNTGCTGCTNTTGGCAA
                      ____________________________________________________________
consensus AGCTGACGACAGAGACCCTGGAAATGGCTCGAGATCTCGAAACTCTGCTGCTCTTGGCAA
 
. : . : . : . : . : . :
rJMSF040E22+ TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
rJMSF008P09+ TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
rJMFF005J21+ TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
                      ____________________________________________________________
consensus TGATAACCAAATCGAGGCCGAGTGGATTGAGCAATACGAGCCCGGTGTTTATATAACGCT
 
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rJMSF040E22+ AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTCGTAGAAGATT
rJMSF008P09+ AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTCGTAGAAGATT
rJMFF005J21+ AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTNGTAGAAGATT
                      ____________________________________________________________
consensus AGTAGCCCTCAGAGAGGGTACTAGAGACCTGAAACGAGTGCGCTTCAGTCGTAGAAGATT
 
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rJMSF040E22+ CGGGGAGCACCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
rJMSF008P09+ CGGGGAGCACCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
rJMFF005J21+ CGGGGAGCNCCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
                      ____________________________________________________________
consensus CGGGGAGCACCAAGCGGAGAGTTGGTGGTCGGAAAACCGCGAAAATGTTTACAAGAGATA
 
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rJMSF040E22+ CAACGTTAGAGGATCCGACATGTCTTCGGCTTCCAGCCACGTTTCTCGAAGGTCAGGACC
rJMSF008P09+ CAACGTTAGAGGATCCGACATGTCTTCGGCTTCCAGCCACGTTTCTCGAAGGTCAGGACC
rJMFF005J21+ CAACGTTAGAGGATCCGACATGTNTTCGGCTTCCAGCCACGTTTNTNGAAGGTCAGGACC
                      ____________________________________________________________
consensus CAACGTTAGAGGATCCGACATGTCTTCGGCTTCCAGCCACGTTTCTCGAAGGTCAGGACC
 
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rJMSF040E22+ GCTCTCTTCGCCCTCCCAAAGCTAAGAAAAAATTAGCAGAGATCTTACTTCTAAACAGGT
rJMSF008P09+ GCTCTCTTCGCCCTCCCAAAGCTAAGAAAAAATTAGCAGAGATCTTACTTCTAAACAGGT
rJMFF005J21+ GCTNTTTTCGCCCTCCCAAAGNTAAGAAAAAATTAGCAGAGATNTTACTTTTAAACAGGT
                      ____________________________________________________________
consensus GCTCTCTTCGCCCTCCCAAAGCTAAGAAAAAATTAGCAGAGATCTTACTTCTAAACAGGT
 
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rJMSF040E22+ GTGCTCTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTCTTTTTCCTTTCCCAAT
rJMSF008P09+ GTGCTCTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTCTTTTTCCTTTCCCAAT
rJMFF005J21+ GTGCTNTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTNTTTTTCCTTTCCCAAT
                      ____________________________________________________________
consensus GTGCTCTTATGAAATAGCCAAAATCCCTTTTCTCTTGCAGCTTCTTTTTCCTTTCCCAAT
 
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rJMSF040E22+ TTTATAA-TTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
rJMSF008P09+ TTTATAA-TTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
rJMFF005J21+ TTTATAATTTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
                      ____________________________________________________________
consensus TTTATAA-TTTTTTTTTCTTGTTTTGATTTGTATTTTTGAGAGCTTATTGCCATTTTCTT
 
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rJMSF040E22+ GGCCATTGTATTCTACTGTATATAATATCATC
rJMSF008P09+ GGCCATTGTATTCTACTGTATATAATATCATC
rJMFF005J21+ GGCCATTGTATTCTACTGTATATAATATCATCAATTGTTGTATTCATTGGAAAAAAAAAG
                      ____________________________________________________________
consensus GGCCATTGTATTCTACTGTATATAATATCATCAATTGTTGTATTCATTGGAAAAAAAAAG