| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005B01 | Sequence | 316 | 009608 (6) | sp|Q84V37.1|PROF_CHEAL | 1e-40 | RecName: Full=Profilin; AltName: Full=Minor pollen allergen Che a 2; AltName: A | 597 | 009608 (6) | gb|KHG15153.1| | 1e-54 | Profilin [Gossypium arboreum] gb|KJB18572.1| hypothetical protein B456_003G06120 |
| JMFN025P22 | Sequence | 302 | 009608 (6) | ref|XP_002304225.1| | 4e-44 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | |||||
| JMFN043F08 | Sequence | 643 | 009608 (6) | ref|XP_002304225.1| | 9e-68 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | |||||
| JMFN043G04 | Sequence | 613 | 009608 (6) | ref|XP_002304225.1| | 7e-68 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | |||||
| JMFN043P12 | Sequence | 620 | 009608 (6) | ref|XP_002304225.1| | 5e-68 | Profilin 3 family protein [Populus trichocarpa] ref|XP_011011002.1| PREDICTED: p | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF005B01- TCAAATCACCCTTCCAGGAGGGGAAAAAACACAAGGGTAATACACCTTGAACCCAGG
____________________________________________________________
consensus TCAAATCACCCTTCCAGGAGGGGAAAAAACACAAGGGTAATACACCTTGAACCCAGG
. : . : . : . : . : . :
rJMFF005B01- GGGGAATTATATCTACTACTACTACTTCATCATCTGCAGAAGAAAACCAGAATCTTGAAT
____________________________________________________________
consensus GGGGAATTATATCTACTACTACTACTTCATCATCTGCAGAAGAAAACCAGAATCTTGAAT
. : . : . : . : . : . :
JMFN043F08+ AATGACTAAAAGCCCTGATCAACCAAATAATCACCAAGCCTTTCAACAA
JMFN043P12+ AATGACTAAAAGCCCTGATCAACCAAATAATCACCAAGCCTTTCAACAA
JMFN043G04+ AATGACTAAAAGCCCTGATCAACCAAATAATCACCAAGCCTTTCAACAA
rJMFF005B01- TGATAGCTGAAAATGACTAAAAGCCCTGATCAACCAAATAATCACCAAGCCTTTCAACAA
____________________________________________________________
consensus TGATAGCTGAAAATGACTAAAAGCCCTGATCAACCAAATAATCACCAAGCCTTTCAACAA
. : . : . : . : . : . :
JMFN043F08+ CCATGTTGCACTGCCCTGGAGTCATTGGCTCATCATATAATCCAAACAGCAAGCACTGGC
JMFN043P12+ CCATGTTGCACTGCCCTGGAGTCATTGGCTCATCATATAATCCAAACAGCAAGCACTGGC
JMFN043G04+ CCATGTTGCACTGCCCTGGAGTCATTGGCTCATCATATAATCCAAACAGCAAGCACTGGC
rJMFF005B01- CCATGTTGCACTGCCCTGGAGTCATTGGCTCATCATATAATCCAAACAGCAAGCACTGGC
____________________________________________________________
consensus CCATGTTGCACTGCCCTGGAGTCATTGGCTCATCATATAATCCAAACAGCAAGCACTGGC
. : . : . : . : . : . :
JMFN043F08+ TAGTCTTCTTAATGCAAATGCCACCAGGTCCCTTCTTTCCACGAACAACAGCCCCTGGCT
JMFN043P12+ TAGTCTTCTTAATGCAAATGCCACCAGGTCCCTTCTTTCCACGAACAACAGCCCCTGGCT
JMFN025P22+ ACAACAGCCCCTGGCT
JMFN043G04+ TAGTCTTCTTAATGCAAATGCCACCAGGTCCCTTCTTTCCACGAACAACAGCCCCTGGCT
rJMFF005B01- TAGTCTTCTTAATGCAAATGCCACCAGGTCCCTTCTTTCCACGAACAACAGCCCCTGGCT
____________________________________________________________
consensus TAGTCTTCTTAATGCAAATGCCACCAGGTCCCTTCTTTCCACGAACAACAGCCCCTGGCT
. : . : . : . : . : . :
JMFN043F08+ CGCCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
JMFN043P12+ CGCCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
JMFN025P22+ CGCCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
JMFF005B01+ CCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
JMFN043G04+ CGCCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
rJMFF005B01- CGCCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
____________________________________________________________
consensus CGCCTTGAATCACCATGTATTTTGCGCCACCAAGGTGGAGCCCAGTTGGAGCAAGAGACC
. : . : . : . : . : . :
JMFN043F08+ CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
JMFN043P12+ CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
JMFN025P22+ CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
JMFF005B01+ CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
JMFN043G04+ CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
rJMFF005B01- CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
____________________________________________________________
consensus CAGGTTCATCAAAATCCTTCATGATTGCAGAAACTTCTCCTGCTTTTAACTGGGGGAAGG
. : . : . : . : . : . :
JMFN043F08+ CGGAGCTCTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAG-AGGTGAGGTGG
JMFN043P12+ CGGAGCTCTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAG-AGGTGAGGTGG
JMFN025P22+ CGGAGCTGTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAG-AGGTGAGGTGG
JMFF005B01+ CGGAGCTCTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAG-AGGTGAGGTGG
JMFN043G04+ CGGAGCTCTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAG-AGGTGAGGTGG
rJMFF005B01- CGGAGCTCTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAGAAGGTGAGGTGG
____________________________________________________________
consensus CGGAGCTCTGGGCCCAGACGCTGCCGTCGAGGCCGAGGATGGCGGCAG-AGGTGAGGTGG
. : . : . : . : . : . :
JMFN043F08+ TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
JMFN043P12+ TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
JMFN025P22+ TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
JMFF005B01+ TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
JMFN043G04+ TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
rJMFF005B01- TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
____________________________________________________________
consensus TTGCCCTCAATATCGCACATAAGGTGCTCATCGACGTAAGTTTGCCACGACATTTTCGAA
. : . : . : . : . : . :
JMFN043F08+ ATTTTCCGATGAAAACTTTCCGGCGAATATGATAATTGATAGTTGTGCTTTGTGA
JMFN043P12+ ATTTTCCGATGAAAACTTTCCGGC
JMFN025P22+ ATTTTCCGATGAAAACTTTCCGGCGAATATGATAATTGATAGTTGTG
JMFF005B01+ ATTTTCCGATGAAAACTTTCCGGC
JMFN043G04+ ATTTTCCGATGAAAACTTTCCGGCGAATATGATAATTGATAGTTGTGCTTTGTGAA
rJMFF005B01- ATTTTCCGATGAAAACTTTCCGGCGAATATGATAATTGATAGTTGTGCTTTGTGAATANA
____________________________________________________________
consensus ATTTTCCGATGAAAACTTTCCGGCGAATATGATAATTGATAGTTGTGCTTTGTGAATANA