Contig 009595:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001F13Sequence500009595 (2)ref|XP_009766983.1|4e-43PREDICTED: RING-H2 finger protein ATL67-like [Nicotiana sylvestris]589009595 (2)ref|XP_009597583.1|7e-60PREDICTED: RING-H2 finger protein ATL67-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF001F13- ATTTTCACCCTTCCA
                      ____________________________________________________________
consensus ATTTTCACCCTTCCA
 
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JMFF001F13- TCATCATCATCATCTTCTTCCACTTCCAATGACAATCCCCTCTTTATACGCCGCCGCTCC
                      ____________________________________________________________
consensus TCATCATCATCATCTTCTTCCACTTCCAATGACAATCCCCTCTTTATACGCCGCCGCTCC
 
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JMFF001F13- TCCTCCTCCTCCTCCGTTAACAACCGTCAAGCCTAATTCTGCCCCCACTAACTTCACCAC
                      ____________________________________________________________
consensus TCCTCCTCCTCCTCCGTTAACAACCGTCAAGCCTAATTCTGCCCCCACTAACTTCACCAC
 
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JMFF001F13- CATCGGTCTTGGCTACGCCATCGCTATCGCCTTTGGCTTCCTCGTCCTCTTCTCCACCGT
                      ____________________________________________________________
consensus CATCGGTCTTGGCTACGCCATCGCTATCGCCTTTGGCTTCCTCGTCCTCTTCTCCACCGT
 
. : . : . : . : . : . :
JMFF001F13- CCTTCTCGCTTCCTACATCTGCTGCCGCTCCATCGCCGCCCGCCGTCGTCGCCGCCGCCT
rJMFF001F13+ CCTACATCTGCTGCCGCTCCATCGCCGCCCGCCGTCGTCGCCGCCGCCT
                      ____________________________________________________________
consensus CCTTCTCGCTTCCTACATCTGCTGCCGCTCCATCGCCGCCCGCCGTCGTCGCCGCCGCCT
 
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JMFF001F13- CGATGCGGAAGCTGGGTACCGTAATTCTCACCCGGACGACAACGGGGTGTACCTTCCGCG
rJMFF001F13+ CGATGCGGAAGCTGGGTACCGTAATTCTCACCCGGACGACAACGGGGTGTACCTTCCGCG
                      ____________________________________________________________
consensus CGATGCGGAAGCTGGGTACCGTAATTCTCACCCGGACGACAACGGGGTGTACCTTCCGCG
 
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JMFF001F13- TATAATCTTCGTGGCGGAAGACGACGAGGAAAACGACGGCGTTTCTGGGCAAAACGTGGC
rJMFF001F13+ TATAATCTTCGTGGCGGAAGACGACGAGGAAAACGACGGCGTTTCTGGGCAAAACGTGGC
                      ____________________________________________________________
consensus TATAATCTTCGTGGCGGAAGACGACGAGGAAAACGACGGCGTTTCTGGGCAAAACGTGGC
 
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JMFF001F13- CCTTGGGCTGGACCAGGCGGTGATCAACTCCTACCCGAAGCTGGTGTACTCCAAGAGGAG
rJMFF001F13+ CCTTGGGCTGGACCAGGCGGTGATCAACTCCTACCCGAAGCTGGTGTACTCCAAGAGGAG
                      ____________________________________________________________
consensus CCTTGGGCTGGACCAGGCGGTGATCAACTCCTACCCGAAGCTGGTGTACTCCAAGAGGAG
 
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JMFF001F13- CGGGAATCCGGGTGGGACCACCGGAAATGACACGTTGTGCTCCATATGTCTGTGCGAGTA
rJMFF001F13+ CGGGAATCCGGGTGGGACCACCGGAAATGACACGTTGTGCTCCATATGTCTGTGCGAGTA
                      ____________________________________________________________
consensus CGGGAATCCGGGTGGGACCACCGGAAATGACACGTTGTGCTCCATATGTCTGTGCGAGTA
 
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JMFF001F13- CAAGG
rJMFF001F13+ CAAGGATTCGGAGATGCTGAGGATGCTGCCGGATTGTAAACATTACTTTCACGTGACCTG
                      ____________________________________________________________
consensus CAAGGATTCGGAGATGCTGAGGATGCTGCCGGATTGTAAACATTACTTTCACGTGACCTG
 
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rJMFF001F13+ CGTGGACGCGTGGCTGAAGCTGAACGCGTCGTGCCCCGTGTGCCGGAACTCTCCCTTGCC
                      ____________________________________________________________
consensus CGTGGACGCGTGGCTGAAGCTGAACGCGTCGTGCCCCGTGTGCCGGAACTCTCCCTTGCC
 
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rJMFF001F13+ GACGCCGCTGTCCACGCCGTTGTCGGAGGTGGTCCCGCTTTCACACTACTCCGATGGACG
                      ____________________________________________________________
consensus GACGCCGCTGTCCACGCCGTTGTCGGAGGTGGTCCCGCTTTCACACTACTCCGATGGACG
 
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rJMFF001F13+ GCGAAGGCAATGATTATGGATTGATTTTTGGTTAGTGTAGGAGGTTGAATTATTTTTGTT
                      ____________________________________________________________
consensus GCGAAGGCAATGATTATGGATTGATTTTTGGTTAGTGTAGGAGGTTGAATTATTTTTGTT
 
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rJMFF001F13+ TTTTGAATTCACTGTGGAAATTCTTGTTATTTAGTGGTGTTAATTAAGGAGGAGATTGAT
                      ____________________________________________________________
consensus TTTTGAATTCACTGTGGAAATTCTTGTTATTTAGTGGTGTTAATTAAGGAGGAGATTGAT