Contig 009586:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C20Sequence564009586 (3)ref|XP_011087403.1|8e-58PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]722012490 (4)ref|XP_009763067.1|4e-44PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]
JMFF051F21Sequence556009586 (3)ref|XP_011087403.1|9e-57PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]496012490 (4)ref|XP_010255998.1|1e-06PREDICTED: protein AUXIN RESPONSE 4 [Nelumbo nucifera]
JMSF052I13Sequence613009586 (3)ref|XP_011087403.1|1e-57PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]919012490 (4)ref|XP_009763067.1|2e-77PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF031C20+ CTCT
JMSF052I13+ ATCCCCACTCTCT
                      ____________________________________________________________
consensus ATCCCCACTCTCT
 
. : . : . : . : . : . :
JMFF051F21+ CCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
JMFF031C20+ TCCTCCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
JMSF052I13+ TCCTCCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
                      ____________________________________________________________
consensus TCCTCCACAACCACAGACTTATCTGAAAATCCCGACCCGGGCAGATCGATCGCAATTGCA
 
. : . : . : . : . : . :
JMFF051F21+ TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
JMFF031C20+ TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
JMSF052I13+ TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
                      ____________________________________________________________
consensus TGAACCCCTTTCTGACCTAACCACTTAACAATTTTCTGAAAGGCAAAAGTGCTGCACCCA
 
. : . : . : . : . : . :
JMFF051F21+ AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
JMFF031C20+ AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
JMSF052I13+ AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
                      ____________________________________________________________
consensus AGCCCATGAACAATGAGAACATGGTCTGGTGACTTAATGGGCCCTTCTTGGATCGAAAAG
 
. : . : . : . : . : . :
JMFF051F21+ ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
JMFF031C20+ ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
JMSF052I13+ ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
                      ____________________________________________________________
consensus ACTTCAACTTGGGGGTGATTGAGCGCAGTCTGGACCTTGATGGTGCGGCCATTTGAATAG
 
. : . : . : . : . : . :
JMFF051F21+ TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
JMFF031C20+ TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
JMSF052I13+ TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
                      ____________________________________________________________
consensus TGGCGGCGCAGATTGGGAGGCAGGCTGAGGAACCAGGCCTTGGGGTCTTTAGGAGAGAAA
 
. : . : . : . : . : . :
JMFF051F21+ GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
JMFF031C20+ GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
JMSF052I13+ GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
                      ____________________________________________________________
consensus GAGGACAGAAAGATAAAGAATAGAGTGACGAGAGAGACTAGAACGGTGAAATAGAACCAG
 
. : . : . : . : . : . :
JMFF051F21+ AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
JMFF031C20+ AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
JMSF052I13+ AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
                      ____________________________________________________________
consensus AATTGAAATGGATTAGATGTATTCTTGGTGGTGGGGGAGGTCCGGGTAGAAGAAGGTGGA
 
. : . : . : . : . : . :
JMFF051F21+ GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
JMFF031C20+ GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
JMSF052I13+ GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
                      ____________________________________________________________
consensus GGAGTGCGGGGTTTAGGGGGTGGTGAAGTGCGGGCTTTAGGTGGTGGGGTGGGTGAATCT
 
. : . : . : . : . : . :
JMFF051F21+ GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
JMFF031C20+ GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
JMSF052I13+ GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
                      ____________________________________________________________
consensus GGTTCTTCAGTTATGATCGCCATTGTAATGCTGGTGATTGCTGGAGTGTATTGGCATGAG
 
. : . : . : . : . : . :
JMFF051F21+ CTCTGATCAAGACTGAAGGT
JMFF031C20+ CTCTGATCAAGACTGAAGGT
JMSF052I13+ CTCTGATCAAGACTGAAGGTAAAGATTCGTGGGATGAAGGCCTGCACTATGAAAAAGGCC
                      ____________________________________________________________
consensus CTCTGATCAAGACTGAAGGTAAAGATTCGTGGGATGAAGGCCTGCACTATGAAAAAGGCC