Contig 009580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003E07Sequence507009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMFF009K08Sequence482009580 (6)ref|XP_009602480.1|7e-63PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMFF025H04Sequence500009580 (6)ref|XP_009602480.1|9e-63PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMFS037A10Sequence524009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMSF012L01Sequence509009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0
JMSF051G05Sequence511009580 (6)ref|XP_009602480.1|1e-62PREDICTED: huntingtin-interacting protein K [Nicotiana tomentosiformis] ref|XP_0

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS037A10+ GCAAAAAAGAAGTTCCAAATAAATGAA
                      ____________________________________________________________
consensus GCAAAAAAGAAGTTCCAAATAAATGAA
 
. : . : . : . : . : . :
JMFS037A10+ ATCTTTCAAACGTTTGTACACTGTTACAGGAAAAAAAAAAAAAAAAACTCTGGCAGGGGC
JMSF012L01+ AAAAAAAAAAAAAAACTCTGGCAGGGGC
JMFF025H04+ AAAAAAAAAAAAAACTCTGGCAGGGGC
JMFF009K08+ TCTGGCAGGGGC
JMFF003E07+ AAAAAAAAAAAAAAACTCTGGCAGGGGC
JMSF051G05+ AAAAAAAAAAAAAAACTCTGGCAGGGGC
                      ____________________________________________________________
consensus ATCTTTCAAACGTTTGTACACTGTTACAGGAAAAAAAAAAAAAAAAACTCTGGCAGGGGC
 
. : . : . : . : . : . :
JMFS037A10+ AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMSF012L01+ AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMFF025H04+ AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMFF009K08+ AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMFF003E07+ AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
JMSF051G05+ AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
                      ____________________________________________________________
consensus AGGGGCAAGCTATGTTCCGATTAGTATTATTGCCAAGAAACAAGCAATGGCATTTCAAGA
 
. : . : . : . : . : . :
JMFS037A10+ TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMSF012L01+ TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMFF025H04+ TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMFF009K08+ TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMFF003E07+ TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
JMSF051G05+ TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
                      ____________________________________________________________
consensus TACCAACCGGAAATCCCCAAACATGTCTTTTCAGAAGGTATTTGTATTGAGCAAGTGCCT
 
. : . : . : . : . : . :
JMFS037A10+ GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMSF012L01+ GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMFF025H04+ GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMFF009K08+ GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMFF003E07+ GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
JMSF051G05+ GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
                      ____________________________________________________________
consensus GATTGCAGCAACAGCATCACCTTTGTGCTCTCGTAGTGTCCGTTCAGCAACCTTTTTGTC
 
. : . : . : . : . : . :
JMFS037A10+ TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMSF012L01+ TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMFF025H04+ TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMFF009K08+ TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMFF003E07+ TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
JMSF051G05+ TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
                      ____________________________________________________________
consensus TACCTCAAGTTCATTTGCAATTATATCAACATCAGCAGCATTTATCTTAACAGCAGCCAG
 
. : . : . : . : . : . :
JMFS037A10+ CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMSF012L01+ CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMFF025H04+ CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMFF009K08+ CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMFF003E07+ CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
JMSF051G05+ CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
                      ____________________________________________________________
consensus CTCCTTCTCCCTCATTCTCATAGCTTGAATATCAGCTTCCCTCGATGCAGCAATTGAGGC
 
. : . : . : . : . : . :
JMFS037A10+ CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMSF012L01+ CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMFF025H04+ CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMFF009K08+ CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMFF003E07+ CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
JMSF051G05+ CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
                      ____________________________________________________________
consensus CATAGCCGTTTGAACACGCGAGGAGTCCAGCTGACGATCTTCGACATGATCGGTGAGCTT
 
. : . : . : . : . : . :
JMFS037A10+ GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMSF012L01+ GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMFF025H04+ GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMFF009K08+ GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMFF003E07+ GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
JMSF051G05+ GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
                      ____________________________________________________________
consensus GTCGAAGGCTTTGCTCTGCTGCTGCAAGTCTTTGGAGTCGACTATCTCTATACCTTCGTC
 
. : . : . : . : . : . :
JMFS037A10+ TCCGGCCTCCATTTTTG
JMSF012L01+ TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCGTAGTGTTC
JMFF025H04+ TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCG
JMFF009K08+ TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCG
JMFF003E07+ TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCG
JMSF051G05+ TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCGTAGTGTTCACC
                      ____________________________________________________________
consensus TCCGGCCTCCATTTTTGCTCTCTTCTGCTGCTCTGCTCAATGTCGTCCGTAGTGTTCACC