Contig 009574:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS107F09Sequence532009574 (5)
JMSF014C20Sequence479009574 (5)ref|XP_011080142.1|1e-25PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Sesamum indicum]805009574 (5)ref|XP_009622503.1|2e-98PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Nicotiana tomentosif
JMSF050L11Sequence657009574 (5)ref|XP_011080142.1|2e-50PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Sesamum indicum]762009574 (5)ref|XP_009622503.1|4e-116PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Nicotiana tomentosif

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014C20- GTGGAATGCCCAAACTAACAATCAAAACACGGGAAGCCC
                      ____________________________________________________________
consensus GTGGAATGCCCAAACTAACAATCAAAACACGGGAAGCCC
 
. : . : . : . : . : . :
rJMSF014C20- CTTTATATTCCAACCATGCCTGTCGTTTGTAAATATGCATGCTCTCCTGTAGCCTTGCAT
                      ____________________________________________________________
consensus CTTTATATTCCAACCATGCCTGTCGTTTGTAAATATGCATGCTCTCCTGTAGCCTTGCAT
 
. : . : . : . : . : . :
rJMSF014C20- TCAACGAAAGAGCAAGGAAAAAGGAGTAGAAGGTAAACATGGAAAGAAGGGGAGAACAAA
rJMSF050L11- ACGAAAGAGCAAGGAAAAAGGAGTAGAAGGTAAACATGGAAAGAAGGGGAGAACAAA
                      ____________________________________________________________
consensus TCAACGAAAGAGCAAGGAAAAAGGAGTAGAAGGTAAACATGGAAAGAAGGGGAGAACAAA
 
. : . : . : . : . : . :
rJMSF014C20- TTCTGCTAACGCTGACTGACGAGTGATCTCATTCATGCTCATAGTAAAGTCTAATTTCAG
rJMSF050L11- TTCTGCTAACGCTGACTGACGAGTGATCTCATTCATGCTCATAGTAAAGTCTAATTTCAG
                      ____________________________________________________________
consensus TTCTGCTAACGCTGACTGACGAGTGATCTCATTCATGCTCATAGTAAAGTCTAATTTCAG
 
. : . : . : . : . : . :
rJMSF014C20- TTCAAAGAACTCTTCCATCCATGCCATCGAGCAGACCAGACCATAGTCCCTTTACAGGTG
rJMSF050L11- TTCAAAGAACTCTTCCATCCATGCCATCGAGCAGACCAGACCATAGTCCCTTTACAGGTG
                      ____________________________________________________________
consensus TTCAAAGAACTCTTCCATCCATGCCATCGAGCAGACCAGACCATAGTCCCTTTACAGGTG
 
. : . : . : . : . : . :
rJMSF014C20- GAAGTTGCACAACAAAAGCATTCCAAGGAGGGTATCCGACACCACTGCCACGAACACGAC
rJMSF050L11- GAAGTTGCACAACAAAAGCATTCCAAGGAGGGTATCCGACACCACTGCCACGAACACGAC
                      ____________________________________________________________
consensus GAAGTTGCACAACAAAAGCATTCCAAGGAGGGTATCCGACACCACTGCCACGAACACGAC
 
. : . : . : . : . : . :
rJMSF014C20- CATCCAAGCGTAGAGAAAGATACACAGGAGACTCAGGGGAGACATTAGCCATATTCTTTT
rJMSF050L11- CATCCAAGCGTAGAGAAAGATACACAGGAGACTCAGGGGAGACATTAGCCATATTCTTTT
                      ____________________________________________________________
consensus CATCCAAGCGTAGAGAAAGATACACAGGAGACTCAGGGGAGACATTAGCCATATTCTTTT
 
. : . : . : . : . : . :
rJMSF014C20- GTTCATCTATCCATTTGATCCAGTCAGTTACATAAACCGGAGAAAGCTGCCATAGCCTTT
rJMSF050L11- GTTCATCTATCCATTTGATCCAGTCAGTTACATAAACCGGAGAAAGCTGCCATAGCCTTT
                      ____________________________________________________________
consensus GTTCATCTATCCATTTGATCCAGTCAGTTACATAAACCGGAGAAAGCTGCCATAGCCTTT
 
. : . : . : . : . : . :
rJMSF014C20- TTCTCCGGGCGTTCTTTTCCCTCATCTCTTCATTTTCCTCAAACTCAAAACTAGGTGAAT
rJMSF050L11- TTCTCCGGGCGTTCTTTTCCCTCATCTCTTCATTTTCCTCAAACTCAAAACTAGGTGAAT
                      ____________________________________________________________
consensus TTCTCCGGGCGTTCTTTTCCCTCATCTCTTCATTTTCCTCAAACTCAAAACTAGGTGAAT
 
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rJMSF014C20- TCCCATCAGTAGCAAATGGAACAACAAGCACTCCTCTTTCTACAAGGGCATCAGTAAATG
rJMSF050L11- TCCCATCAGTAGCAAATGGAACAACAAGCACTCCTCTTTCTACAAGGGCATCAGTAAATG
                      ____________________________________________________________
consensus TCCCATCAGTAGCAAATGGAACAACAAGCACTCCTCTTTCTACAAGGGCATCAGTAAATG
 
. : . : . : . : . : . :
rJMSF014C20- GTTCACTGAGTTTAAAACACTCAGAAATGAAAGATGAAGGACCAGCAAGAATGACCAGAC
rJMSF050L11- GTTCACTGAGTTTAAAACACTCAGAAATGAAAGATGAAGGACCAGCAAGAATGACCAGAC
                      ____________________________________________________________
consensus GTTCACTGAGTTTAAAACACTCAGAAATGAAAGATGAAGGACCAGCAAGAATGACCAGAC
 
. : . : . : . : . : . :
rJMSF014C20- GAGCAATTCCTCTAAAATCACTAACAGGAAGAATTCTCTTCTCATCCACACGAAGCTTTA
rJMSF050L11- GAGCAATTCCTCTAAAATCACTAACAGGAAGAATTCTCTTCTCATCCACACGAAGCTTTA
                      ____________________________________________________________
consensus GAGCAATTCCTCTAAAATCACTAACAGGAAGAATTCTCTTCTCATCCACACGAAGCTTTA
 
. : . : . : . : . : . :
rJMSF014C20- GATTTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
rJMSF050L11- GATTTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
JMSF050L11+ TTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
                      ____________________________________________________________
consensus GATTTGAGAGGTTCTCTTCTCTTGAGAGTTTAGCTATTTGAGCATTTTTAGCTCTATTCT
 
. : . : . : . : . : . :
rJMSF014C20- CCCTGTAATAAAGAAAGGCAA
rJMSF050L11- CCCTGTAATAAAGAAAGGCAAATATGGAGACTGCTCCNATGTCTATAGCAAGACCTTGTG
JMSF050L11+ CCCTGTAATAAAGAAAGGCAAATATGGAGACTGCTCCAATGTCTATAGCAAGACCTTGTG
                      ____________________________________________________________
consensus CCCTGTAATAAAGAAAGGCAAATATGGAGACTGCTCCAATGTCTATAGCAAGACCTTGTG
 
. : . : . : . : . : . :
rJMSF050L11- CGATCTCTGGAACTTCAGCAGCTCTTGATGAATTTGCCAGTGCTC
JMSF050L11+ CGATCTCTGGAACTTCAGCAGCTCTTGATGAATTTGCCAGTGCTCCAATCAGCCGTGATG
                      ____________________________________________________________
consensus CGATCTCTGGAACTTCAGCAGCTCTTGATGAATTTGCCAGTGCTCCAATCAGCCGTGATG
 
. : . : . : . : . : . :
JMSF050L11+ TGGCTATAAATCCTCCAAGAGAACCACTTCCAATAAAAGCAAGATAGAAGAACATACGGA
                      ____________________________________________________________
consensus TGGCTATAAATCCTCCAAGAGAACCACTTCCAATAAAAGCAAGATAGAAGAACATACGGA
 
. : . : . : . : . : . :
JMFS107F09+ CTAATTTCTGATG
JMSF014C20+ CTAATTTCTGATG
JMSF050L11+ GGGATCGAAAAGGAGAAAGAACTTCGCTTCTTATCTTGGCTGTAGAACTAATTTCTGATG
                      ____________________________________________________________
consensus GGGATCGAAAAGGAGAAAGAACTTCGCTTCTTATCTTGGCTGTAGAACTAATTTCTGATG
 
. : . : . : . : . : . :
JMFS107F09+ ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
JMSF014C20+ ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
JMSF050L11+ ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
                      ____________________________________________________________
consensus ATGGAGAGGAATTATTGGAAGCAAAACAGGTGACATAGGATGTCCTTCGCACTCCACGGC
 
. : . : . : . : . : . :
JMFS107F09+ GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
JMSF014C20+ GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
JMSF050L11+ GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
                      ____________________________________________________________
consensus GGCGTGAGGTTAGGCCAGTGACGGCTGAAACGTCGGAGCTCCACTTACAGCCATTGATTT
 
. : . : . : . : . : . :
JMFS107F09+ GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
JMSF014C20+ GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
JMSF050L11+ GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
                      ____________________________________________________________
consensus GGCGGCAAAGTCCGAGATGTTTCCTGTCGGAACGGAATTGGGGGAGACTAACCGTCGTAA
 
. : . : . : . : . : . :
JMFS107F09+ TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
JMSF014C20+ TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
JMSF050L11+ TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
                      ____________________________________________________________
consensus TAATGTAGTGACAGTAGTGCGTGGCGGCGGAGACGGCGGCCATGGGTGGATGGAATATCT
 
. : . : . : . : . : . :
JMFS107F09+ CCGGTCAGCTTTAACCTTCCGAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
JMSF014C20+ CCGGTCAGCTTTAACCTTCCAAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
JMSF050L11+ CCGGTCAGCTTTAACCTTCCGAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
                      ____________________________________________________________
consensus CCGGTCAGCTTTAACCTTCCGAAATGCAGTTACGACGGTTAGCAGTGGACATGGTCACAG
 
. : . : . : . : . : . :
JMFS107F09+ TGAGCTCGAAAATCCGTTACGGCCATTGGTTCGGTTGATTTGATTG
JMSF014C20+ TGAGCTC
JMSF050L11+ TGAGCTCGAAAATCCGTTACGGCCATTGGTTCGGTTGATTTGATTGATCAGAATACCGCC
                      ____________________________________________________________
consensus TGAGCTCGAAAATCCGTTACGGCCATTGGTTCGGTTGATTTGATTGATCAGAATACCGCC