Contig 009564:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037L15Sequence715009564 (4)ref|XP_009791574.1|2e-72PREDICTED: prefoldin subunit 6 [Nicotiana sylvestris]709009564 (4)ref|XP_009791574.1|2e-72PREDICTED: prefoldin subunit 6 [Nicotiana sylvestris]
JMSF049B17Sequence691009564 (4)ref|XP_009791574.1|1e-72PREDICTED: prefoldin subunit 6 [Nicotiana sylvestris]689009564 (4)ref|XP_009791574.1|1e-72PREDICTED: prefoldin subunit 6 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF049B17-                    AGCTTCACACATAACGTTTGTCCAGATGAACTAAATGTACTCT-GTTCCA
JMSF037L15+              GGAAAGAAGCTTCACACATAACGTTNGTCCAGATGAACTAAATGTACTCT-GTTCCA
rJMSF037L15-                    AGCTTCACACATAACGTTTGTCCAGATGAACTAAATGTACTCTGGTTCCA
JMSF049B17+                                        GTCCAGATGAACTAAATGTACTCT-GTTCCA
                      ____________________________________________________________
consensus                GGAAAGAAGCTTCACACATAACGTTTGTCCAGATGAACTAAATGTACTCT-GTTCCA
 
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rJMSF049B17-          TACAACTGAAATCAATGGAAGGCCCAACCCCAAGATACCGAGATCTTAAAAACTAAAAAT
JMSF037L15+           TACAACTGAAATCAATGGAAGGCCCAACCCCAAGATACCGAGATCTTAAAAACTAAAAAT
rJMSF037L15-          TACAACTGAAATCAATGGAAGGCCCAACCCCAAGATACCGAGATCTTAAAAACTAAAAAT
JMSF049B17+           TACAACTGAAATCAATGGAAGGCCCAACCCCAAGATACCGAGATCTTAAAAACTAAAAAT
                      ____________________________________________________________
consensus             TACAACTGAAATCAATGGAAGGCCCAACCCCAAGATACCGAGATCTTAAAAACTAAAAAT
 
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rJMSF049B17-          AACACAGATTTGATTACTGTGCATCACTGCAAATGTCAACTGGGAGAGAATGATATTCAT
JMSF037L15+           AACACAGATTTGATTACTGTGCATCACTGCAAATGTCAACTGGGAGAGAATGATATTCAT
rJMSF037L15-          AACACAGATTTGATTACTGTGCATCACTGCAAATGTCAACTGGGAGAGAATGATATTCAT
JMSF049B17+           AACACAGATTTGATTACTGTGCATCACTGCAAATGTCAACTGGGAGAGAATGATATTCAT
                      ____________________________________________________________
consensus             AACACAGATTTGATTACTGTGCATCACTGCAAATGTCAACTGGGAGAGAATGATATTCAT
 
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rJMSF049B17-          GTGCCACAGCAATCAAAAATAGCAGCTACATAATCTTCAAGCTTGCCGGTATATTACGCT
JMSF037L15+           GTGCCACAGCAATCAAAAATAGCAGCTACATAATCTTCAAGCTTGCCGGTATATTACGCT
rJMSF037L15-          GTGCCACAGCAATCAAAAATAGCAGCTACATAATCTTCAAGCTTGCCGGTATATTACGCT
JMSF049B17+           GTGCCACAGCAATCAAAAATAGCAGCTACATAATCTTCAAGCTTGCCGGTATATTACGCT
                      ____________________________________________________________
consensus             GTGCCACAGCAATCAAAAATAGCAGCTACATAATCTTCAAGCTTGCCGGTATATTACGCT
 
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rJMSF049B17-          TTGCTTTTTCCTGCCTGGGTTGATTGAATTCGTTGTTGTAATTTAAAGATCGTTTCTTTC
JMSF037L15+           TTGCTTTTTCCTGCCTGGGTTGATTGAATTCGTTGTTGTAATTTAAAGATCGTTTCTTTC
rJMSF037L15-          TTGCTTTTTCCTGCCTGGGTTGATTGAATTCGTTGTTGTAATTTAAAGATCGTTTCTTTC
JMSF049B17+           TTGCTTTTTCCTGCCTGGGTTGATTGAATTCGTTGTTGTAATTTAAAGATCGTTTCTTTC
                      ____________________________________________________________
consensus             TTGCTTTTTCCTGCCTGGGTTGATTGAATTCGTTGTTGTAATTTAAAGATCGTTTCTTTC
 
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rJMSF049B17-          TTGCTGTTTTGCTTTTCTTCTAAATCTTGAAGGGTGGCATCCAAACGCTTCAATTCGGCC
JMSF037L15+           TTGCTGTTTTGCTTTTCTTCTAAATCTTGAAGGGTGGCATCCAAACGCTTCAATTCGGCC
rJMSF037L15-          TTGCTGTTTTGCTTTTCTTCTAAATCTTGAAGGGTGGCATCCAAACGCTTCAATTCGGCC
JMSF049B17+           TTGCTGTTTTGCTTTTCTTCTAAATCTTGAAGGGTGGCATCCAAACGCTTCAATTCGGCC
                      ____________________________________________________________
consensus             TTGCTGTTTTGCTTTTCTTCTAAATCTTGAAGGGTGGCATCCAAACGCTTCAATTCGGCC
 
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rJMSF049B17-          GAGATGTACTCAATTCGCTTCTTGACATTGGCCCTGGCCTCTGCCAGGTCCTGCTTTACC
JMSF037L15+           GAGATGTACTCAATTCGCTTCTTGACATTGGCCCTGGCCTCTGCCAGGTCCTGCTTTACC
rJMSF037L15-          GAGATGTACTCAATTCGCTTCTTGACATTGGCCCTGGCCTCTGCCAGGTCCTGCTTTACC
JMSF049B17+           GAGATGTACTCAATTCGCTTCTTGACATTGGCCCTGGCCTCTGCCAGGTCCTGCTTTACC
                      ____________________________________________________________
consensus             GAGATGTACTCAATTCGCTTCTTGACATTGGCCCTGGCCTCTGCCAGGTCCTGCTTTACC
 
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rJMSF049B17-          AGCACGGGCCCGATCAGTTTGTACACATTCGCTTCTTCATTCAACAGATCCAATTCCTTA
JMSF037L15+           AGCACGGGCCCGATCAGTTTGTACACATTCGCTTCTTCATTCAACAGATCCAATTCCTTA
rJMSF037L15-          AGCACGGGCCCGATCAGTTTGTACACATTCGCTTCTTCATTCAACAGATCCAATTCCTTA
JMSF049B17+           AGCACGGGCCCGATCAGTTTGTACACATTCGCTTCTTCATTCAACAGATCCAATTCCTTA
                      ____________________________________________________________
consensus             AGCACGGGCCCGATCAGTTTGTACACATTCGCTTCTTCATTCAACAGATCCAATTCCTTA
 
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rJMSF049B17-          AGGACAAGCTCGTTTTCACCGAGCTGAATGGTGTACTTCTTTCTGACTTGGTGGTTTTTG
JMSF037L15+           AGGACAAGCTCGTTTTCACCGAGCTGAATGGTGTACTTCTTTCTGACTTGGTGGTTTTTG
rJMSF037L15-          AGGACAAGCTCGTTTTCACCGAGCTGAATGGTGTACTTCTTTCTGACTTGGTGGTTTTTG
JMSF049B17+           AGGACAAGCTCGTTTTCACCGAGCTGAATGGTGTACTTCTTTCTGACTTGGTGGTTTTTG
                      ____________________________________________________________
consensus             AGGACAAGCTCGTTTTCACCGAGCTGAATGGTGTACTTCTTTCTGACTTGGTGGTTTTTG
 
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rJMSF049B17-          GCTATATCTTTTTGTAGCTGGCTGAGATCGTTAGCTTTGCTTTCTAGGTCACGCTGCAGG
JMSF037L15+           GCTATATCTTTTTGTAGCTGGCTGAGATCGTTAGCTTTGCTTTCTAGGTCACGCTGCAGG
rJMSF037L15-          GCTATATCTTTTTGTAGCTGGCTGAGATCGTTAGCTTTGCTTTCTAGGTCACGCTGCAGG
JMSF049B17+           GCTATATCTTTTTGTAGCTGGCTGAGATCGTTAGCTTTGCTTTCTAGGTCACGCTGCAGG
                      ____________________________________________________________
consensus             GCTATATCTTTTTGTAGCTGGCTGAGATCGTTAGCTTTGCTTTCTAGGTCACGCTGCAGG
 
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rJMSF049B17-          TCCCGTAGAGTATTTGAGGAAGACGCCATCTTCGCTGATTCCCGGCGGAGCTCTGGGGAC
JMSF037L15+           TCCCGTAGAGTATTTGAGGAAGACGCCATCTTCGCTGATTCCCGGCGGAGCTCTGGGGAC
rJMSF037L15-          TCCCGTAGAGTATTTGAGGAAGACGCCATCTTCGCTGATTCCCGGCGGAGCTCTGGGGAC
JMSF049B17+           TCCCGTAGAGTATTTGAGGAAGACGCCATCTTCGCTGATTCCCGGCGGAGCTCTGGGGAC
                      ____________________________________________________________
consensus             TCCCGTAGAGTATTTGAGGAAGACGCCATCTTCGCTGATTCCCGGCGGAGCTCTGGGGAC
 
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rJMSF049B17-          TTTCGTCGTCGACTGGACTGAATTTACAGTAAT                           
JMSF037L15+           TTTCGTCGTCGACTGGACTGAATTTACAGTAATTTAGGGCAAAATAAATATTGAACCC  
rJMSF037L15-          TTTCGTCGTCGACTGGACTGAATTTACAGTAATTTAGGGCAAAATAAATATTGAACCC  
JMSF049B17+           TTTCGTCGTCGACTGGACTGAATTTACAGTAATTTAGGGCAAAATAAATATTGAACCCGC
                      ____________________________________________________________
consensus             TTTCGTCGTCGACTGGACTGAATTTACAGTAATTTAGGGCAAAATAAATATTGAACCCGC