clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN011P07 | Sequence | 626 | 009549 (4) | emb|CDP15053.1| | 2e-109 | unnamed protein product [Coffea canephora] | |||||
JMSF022M06 | Sequence | 655 | 009549 (4) | emb|CDP15053.1| | 2e-108 | unnamed protein product [Coffea canephora] | 744 | 007225 (3) | ref|XP_011074284.1| | 2e-127 | PREDICTED: tubulin gamma-1 chain [Sesamum indicum] |
JMSF047M18 | Sequence | 698 | 009549 (4) | emb|CDP15053.1| | 4e-117 | unnamed protein product [Coffea canephora] | 750 | 007225 (3) | ref|XP_011074284.1| | 3e-122 | PREDICTED: tubulin gamma-1 chain [Sesamum indicum] |
JMSF047P04 | Sequence | 666 | 009549 (4) | emb|CDP15053.1| | 5e-119 | unnamed protein product [Coffea canephora] | 745 | 007225 (3) | ref|XP_011074284.1| | 2e-127 | PREDICTED: tubulin gamma-1 chain [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF047P04+ ATGTCTGAACAAGTTTTTTGCTATAGCGATCATTAAGAGTCTC
JMSF022M06+ GTCTC
JMFN011P07+ GTCTC
JMSF047M18+ TGAACAAGTTTTTTGCTATAGCGATCATTAAGAGTCTC
____________________________________________________________
consensus ATGTCTGAACAAGTTTTTTGCTATAGCGATCATTAAGAGTCTC
. : . : . : . : . : . :
JMSF047P04+ CAACAAATATGAGCCCATACCTGAGCCTGTTCCACCAGCAATTGAATGACAGAGAACAAA
JMSF022M06+ CAACAAATATGAGCCCATACCTGAGCCTGTTCCACCAGCAATTGAATGACAGAGAACAAA
JMFN011P07+ CAACAAATATGAGCCCATACCTGAGCCTGTTCCACCAGCAATTGAATGACAGAGAACAAA
JMSF047M18+ CAACAAATATGAGCCCATACCTGAGCCTGTTCCACCAGCAATTGAATGACAGAGAACAAA
____________________________________________________________
consensus CAACAAATATGAGCCCATACCTGAGCCTGTTCCACCAGCAATTGAATGACAGAGAACAAA
. : . : . : . : . : . :
JMSF047P04+ ACCCTCAAGACTATCACTTCCATCAGCCTCTCTATCAATCATGTCCATTAAGTCTTCCTC
JMSF022M06+ ACCCTCAAGACTATCACTTCCATCAGCCTCTCTATCAATCATGTCCATTAAGTCTTCCTC
JMFN011P07+ ACCCTCAAGACTATCACTTCCATCAGCCTCTCTATCAATCATGTCCATTAAGTCTTCCTC
JMSF047M18+ ACCCTCAAGACTATCACTTCCATCAGCCTCTCTATCAATCATGTCCATTAAGTCTTCCTC
____________________________________________________________
consensus ACCCTCAAGACTATCACTTCCATCAGCCTCTCTATCAATCATGTCCATTAAGTCTTCCTC
. : . : . : . : . : . :
JMSF047P04+ ATATTGCTTTCCCTGATGATATCCACTTGCCCAATTATTGCCAGCACCTCCCCCATGATC
JMSF022M06+ ATATTGCTTTCCCTGATGATATCCACTTGCCCAATTATTGCCAGCACCTCCCCCATGATC
JMFN011P07+ ATATTGCTTTCCCTGATGATATCCACTTGCCCAATTATTGCCAGCACCTCCCCCATGATC
JMSF047M18+ ATATTGCTTTCCCTGATGATATCCACTTGCCCAATTATTGCCAGCACCTCCCCCATGATC
____________________________________________________________
consensus ATATTGCTTTCCCTGATGATATCCACTTGCCCAATTATTGCCAGCACCTCCCCCATGATC
. : . : . : . : . : . :
JMSF047P04+ AGCAATAAATACATTCTCATGATTGTAAAGGTTCCTGTATTCGCCATTTTGTATACCATT
JMSF022M06+ AGCAATAAATACATTCTCATGATTGTAAAGGTTCCTGTATTCGCCATTTTGTATACCATT
JMFN011P07+ AGCAATAAATACATTCTCATGATTGTAAAGGTTCCTGTATTCGCCATTTTGTATACCATT
JMSF047M18+ AGCAATAAATACATTCTCATGATTGTAAAGGTTCCTGTATTCGCCATTTTGTATACCATT
____________________________________________________________
consensus AGCAATAAATACATTCTCATGATTGTAAAGGTTCCTGTATTCGCCATTTTGTATACCATT
. : . : . : . : . : . :
JMSF047P04+ AATCACCCTGGGCTCCAAATCCATCAGCAAAGCCCGTGGAATATAGTGTTGATCATCAGC
JMSF022M06+ AATCACCCTGGGCTCCAAATCCATCAGCAAAGCCCGTGGAATATAGTGTTGATCATCAGC
JMFN011P07+ AATCACCCTGGGCTCCAAATCCATCAGCAAAGCCCGTGGAATATAGTGTTGATCATCAGC
JMSF047M18+ AATCACCCTGGGCTCCAAATCCATCAGCAAAGCCCGTGGAATATAGTGTTGATCATCAGC
____________________________________________________________
consensus AATCACCCTGGGCTCCAAATCCATCAGCAAAGCCCGTGGAATATAGTGTTGATCATCAGC
. : . : . : . : . : . :
JMSF047P04+ TTGATAGAAAAATACATCTTTTCTATCACCTCCCTGAGTGGCGAAGTCTTCTAGAATGCC
JMSF022M06+ TTGATAGAAAAATACATCTTTTCTATCACCTCCCTGAGTGGCGAAGTCTTCTAGAATGCC
JMFN011P07+ TTGATAGAAAAATACATCTTTTCTATCACCTCCCTGAGTGGCGAAGTCTTCTAGAATGCC
JMSF047M18+ TTGATAGAAAAATACATCTTTTCTATCACCTCCCTGAGTGGCGAAGTCTTCTAGAATGCC
____________________________________________________________
consensus TTGATAGAAAAATACATCTTTTCTATCACCTCCCTGAGTGGCGAAGTCTTCTAGAATGCC
. : . : . : . : . : . :
JMSF047P04+ ATCCTTACTGATGCCGTGCTCTAGGCAGAGCTGCTTCCAGAATTCCATTCCGATCTGATT
JMSF022M06+ ATCCTTACTGATGCCGTGCTCTAGGCAGAGCTGCTTCCAGAATTCCATTCCGATCTGATT
JMFN011P07+ ATCCTTACTGATGCCGTGCTCTAGGCAGAGCTGCTTCCAGAATTCCATTCCGATCTGATT
JMSF047M18+ ATCCTTACTGATGCCGTGCTCTAGGCAGAGCTGCTTCCAGAATTCCATTCCGATCTGATT
____________________________________________________________
consensus ATCCTTACTGATGCCGTGCTCTAGGCAGAGCTGCTTCCAGAATTCCATTCCGATCTGATT
. : . : . : . : . : . :
JMSF047P04+ CCCGCATTGTCCCACTTGCAGAGTGATGATTTCCCTCGGCATTTTCGTCGTCCTCTTCCT
JMSF022M06+ CCCGCATTGTCCCACTTGCAGAGTGATGATTTCCCTCGGCATTTTCGTCGTCCTCTTCCT
JMFN011P07+ CCCGCATTGTCCCACTTGCAGAGTGATGATTTCCCTCGGCATTTTCGTCGTCCTCTTCCT
JMSF047M18+ CCCGCATTGTCCCACTTGCAGAGTGATGATTTCCCTCGGCATTTTCGTCGTCCTCTTCCT
____________________________________________________________
consensus CCCGCATTGTCCCACTTGCAGAGTGATGATTTCCCTCGGCATTTTCGTCGTCCTCTTCCT
. : . : . : . : . : . :
JMSF047P04+ TCGTCTTCCCGGACAAAACCTCTACAGGTTTTCTAGGGTTTTTCTTGTGGATCCTCTGTA
JMSF022M06+ TCGTCTTCCCGGACAAAACCTCTACAGGTTTT-TAGGGTTTTTCTTGTGGATCCTCTGTA
JMFN011P07+ TCGTCTTCCCGGACAAAACCTCTACAGGTTTTCTAGGGTTTTTCTTGTGGATCCTCTGTA
JMSF047M18+ TCGTCTTCCCGGACAAAACCTCTACAGGTTTTCTAGGGTTTTTCTTGTGGATCCTCTGTA
____________________________________________________________
consensus TCGTCTTCCCGGACAAAACCTCTACAGGTTTTCTAGGGTTTTTCTTGTGGATCCTCTGTA
. : . : . : . : . : . :
JMSF047P04+ ATCTTTATTGGGACTTGGGAGGGGAAAAAGGATGGAGGGAATTGCGAGTGTTAATTGTTA
JMSF022M06+ ATCTTTATTGGGACTTGGGAGGGGAAAAAGGATGGAGGGAATTGCGAGTGTTAATTGTTA
JMFN011P07+ ATCTTTATTGGGACTTGGGAGGGGAAAAAGGATGGAGGGAATTGCGAGTGTTAATTGTTA
JMSF047M18+ ATCTTTATTGGGACTTGGGAGGGGAAAAAGGATGGAGGGAATTGCGAGTGTTAATTGTTA
____________________________________________________________
consensus ATCTTTATTGGGACTTGGGAGGGGAAAAAGGATGGAGGGAATTGCGAGTGTTAATTGTTA
. : . : . : . : . : . :
JMSF047P04+ AACCTTAAACCCATGTCTCT
JMSF022M06+ AACCTTAAACCCATGTCTCTTCAGATTTCAGATTTCAGATTTCAGATTTC
JMFN011P07+ AACCTTAAACCCATGTCTCT
JMSF047M18+ AACCTTAAACCCATGTCTCTTCAGATTTCAGATTTCAGATTTCAGATTTCAGATTTCCAA
____________________________________________________________
consensus AACCTTAAACCCATGTCTCTTCAGATTTCAGATTTCAGATTTCAGATTTCAGATTTCCAA