Contig 009543:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020N16Sequence575009543 (7)ref|XP_009624579.1|2e-06PREDICTED: putative late blight resistance protein homolog R1A-10 isoform X1 [N776020183ref|XP_006365680.1|2e-17PREDICTED: putative late blight resistance protein homolog R1B-16-like isoform
JMFF026P21Sequence179009543 (7)608016977ref|XP_011077104.1|1e-07PREDICTED: putative late blight resistance protein homolog R1B-14 [Sesamum indi
JMFS013C12Sequence617009543 (7)ref|XP_009589795.1|2e-07PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to
JMFS020G11Sequence632009543 (7)gb|AAV88066.1|2e-08NBS-LRR protein [Ipomoea batatas]
JMFS067A01Sequence627009543 (7)ref|XP_009779880.1|5e-26PREDICTED: putative late blight resistance protein homolog R1A-10 [Nicotiana sy
JMSF004C12Sequence291009543 (7)gb|AAV88066.1|5e-04NBS-LRR protein [Ipomoea batatas]342004183 (2)
JMSF047B13Sequence671009543 (7)gb|AAV88065.1|4e-06leucine-rich repeat protein [Ipomoea batatas]753022651

Alignment

This contig is upended


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JMFS067A01+                   GTAGTGCTAGGTCCCCATCACTGCTATTGTTTACATTGTCTTTAGAACCAAG
                      ____________________________________________________________
consensus                     GTAGTGCTAGGTCCCCATCACTGCTATTGTTTACATTGTCTTTAGAACCAAG
 
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JMFS067A01+           AAGACCTAAGATCATTTGCCTCTTATTGTGATGTTGTGATACAACAACCCATAGTCGTCT
                      ____________________________________________________________
consensus             AAGACCTAAGATCATTTGCCTCTTATTGTGATGTTGTGATACAACAACCCATAGTCGTCT
 
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JMFS067A01+           ATCAAAGTGGGAGACAATTGATCGATTTTCATAAACTCGTCTAGCTAACGTTGTCTTGCC
                      ____________________________________________________________
consensus             ATCAAAGTGGGAGACAATTGATCGATTTTCATAAACTCGTCTAGCTAACGTTGTCTTGCC
 
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JMFS067A01+           GATTCCTCCCATACCTTGAATTGAGACAACTTCTCGTTGTTTAGATGGATGTTGTATTAG
JMFF020N16+                           TGAATTGAGACAACTTCTCGTTGTTTAGATGGATGTTGTATTAG
JMFS020G11+                                                           ATGTTGTATTAG
                      ____________________________________________________________
consensus             GATTCCTCCCATACCTTGAATTGAGACAACTTCTCGTTGTTTAGATGGATGTTGTATTAG
 
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JMFS067A01+           CATCTTCCTTATAATCTCGAATTCATTGTTTTTCCCAACCATTATATCCTCACTGTGTGG
JMFF020N16+           CATCTTCCTTATAATCTCGAATTCATTGTTTTTCCCAACCATTATATCCTCACTGTGTGG
JMFS020G11+           CATCTTCATTATAATGTCGAACTCATTGTTTTTCCCGACCATTATGTCCTCAGTGTGTGA
                      ____________________________________________________________
consensus             CATCTTCCTTATAATCTCGAATTCATTGTTTTTCCCAACCATTATATCCTCACTGTGTGG
 
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JMFS067A01+           AGCATGATTGGA------GGAACCGTCCATCCTGACAAGTTCATCATCAGATTTTGGAAT
JMFF020N16+           AGCATGATTGGA------GGAACCGTCCATCCTGACAAGTTCATCATCAGATTTTGGAAT
JMFS013C12+                                        TCTTGACAAGTTCATCATCAGATTTTGGATT
JMFS020G11+           AGCACGATTGGAGGAACCGGAACCGTCTGTCTTGACAAGTTCATCATCAGATTTTGAAAC
                      ____________________________________________________________
consensus             AGCATGATTGGA------GGAACCGTCCATCTTGACAAGTTCATCATCAGATTTTGGAAT
 
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JMFS067A01+           AA---CATCAACAAGTGTAGTCTTCCTTCCTTGCACAGCTACGACATGCTTGTACTCCAT
JMFF020N16+           AA---CATCAACAAGTGTAGTCTTCCTTCCTTGCACAGCTACGACATGCTTGTACTCCAT
JMFS013C12+           AACATCATCATCAAGTGTAGTCTCCCTTCCTTGCACAGCTATGACATGCTTGTACTCCAT
JMFS020G11+           AACATCATCAACAAGTGTAGTCTCCCTTCCTTGCACAGCTATGACATGCTTGTACTCCAT
JMSF047B13+                CATCATCAAGTGTAGTCTCCCTTCGTTGCCCAGCTGTGACAAGCTTGTACTCCAT
                      ____________________________________________________________
consensus             AACATCATCAACAAGTGTAGTCTCCCTTCCTTGCACAGCTATGACATGCTTGTACTCCAT
 
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JMFS067A01+           CATGAATTTCTCCAGCTCTTCTTTAATGGTATCAATGTCTTCTATTGCTTTTTGCAATAC
JMFF020N16+           CATGAATTTCTCCAGCTCTTCTTTAATGGTATCAATGTCTTCTATTGCTTTTTGCAATAC
JMFS013C12+           CATGACTTTCTCCAGCTCTTCTTTAATAGCATCAATGTCTTTTATTGCTTGTTGCAATAC
JMFS020G11+           CATGACTTTCTCCAGCTCTTCTTTAATGGCATAAATGTCTTCTATTGCTTGTTGCAATAC
JMSF047B13+           CATGAGTTTCTCCAGCTCTTCTTTAATGGCATCAATGTCTTCTATTGCTTGTTGCAATAC
                      ____________________________________________________________
consensus             CATGACTTTCTCCAGCTCTTCTTTAATGGCATCAATGTCTTCTATTGCTTGTTGCAATAC
 
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JMFS067A01+           ATGACTAAGTGTATGAGGATACTGGGTTTTTTTCGCTTCAGTGTCCCCTCGTCTCTTTTT
JMFF020N16+           ATGACTAAGTGTATGAGGATACTGGGTTTTTTTCGCTTCAGTGTCCCCTCGTCTCTTTTT
JMFS013C12+           ATGACTAAGTCTATGAGAATGCTGGGTTTTTTTGGCTTCAGTGTCCCCTTGTCCCATTTC
JMFS020G11+           ATGACTAAGTCTATGACAATGCTGGGTTTTCTTGGCTTCAGTGTCCCCTTGTCCCATTTC
JMSF047B13+           ATGACTAAGTCTATGACAATGCTGGGTTTTTTTGGCTTCAGTGTCCCGTTGTCCCATTTC
                      ____________________________________________________________
consensus             ATGACTAAGTCTATGAGAATGCTGGGTTTTTTTGGCTTCAGTGTCCCCTTGTCCCATTTC
 
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JMFS067A01+           CTTGTTAGCTTCTTTATAGAGATCTACCACATGGAGTTCAATTTCATCTTCTACTCTGAA
JMFF020N16+           CTTGTTAGCTTCTTTATAGAGATCTACCACATGGAGTTCAATTTCATCTTCTACTCTGAA
JMFS013C12+           ATCGTCAGCTTCTTTATAGAGATGTACCACATGGTGTTCAATTTCATCTTCTACTCTGAA
JMFS020G11+           CTCGTCAGCTTCTTTATAGAGATCTACCACATGGAGCTCAATTTCATCTTCTACTCTGAA
JMSF047B13+           CTCGTCAGCTTCTTTATAGAGATGTATCACATGGAGTTCAATTTCATCTTCTACTCTGAA
                      ____________________________________________________________
consensus             CTCGTCAGCTTCTTTATAGAGATCTACCACATGGAGTTCAATTTCATCTTCTACTCTGAA
 
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JMFS067A01+           AGCTACATCTTTGAGCTTTGTTTCCAAGTCTTTAATTGCTTCAA                
JMFF026P21+             CTACATCTTTGAGCTTTGTTTCCAAGTCTTTAANTGCTTCAACACCATCCATTCTGCT
JMFF020N16+           AGCTACATCTTTGAGCTTTGTTTCCAAGTCTTTAATTGCTTCAACACCATCCATTCTGCT
JMFS013C12+           AGCTACATCTCTGAGCTTTGTTTCCAAGTCTTTAATTGCTTCAACACCATCCATTCTGAA
JMSF004C12+                      TGAGCTTTGTTTCCAACTCTTTAATTGCTTCAACACCATCCATTCTGCT
JMFS020G11+           AGCTACATCTCTGAGCTTTGTTTCCAACTCTTTAATTGCTTCAACACCATCCATTCTGCT
JMSF047B13+           AGCTACTTCTCCGAGCTTTGTTTCCAACTCTTTAATTGCTTCAACACCATCCATTCTGCT
                      ____________________________________________________________
consensus             AGCTACATCTTTGAGCTTTGTTTCCAAGTCTTTAATTGCTTCAACACCATCCATTCTGCT
 
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JMFF026P21+           CTCATCGAACAGTNGTATAAGAAAACCAAGCTTTGCATGGAGAGATTGGATGAGGTCTTT
JMFF020N16+           CTCATCGAACAGTTGTATAAGAAAACCAAGCTTTGCATGGAGAGATTGGATGAGGTCTTT
JMFS013C12+           CTCGTCGAACAGTTGTATCAGAAAACCAAGCTTTGCATGGAGAGATTGGATGAGGTCTTT
JMSF004C12+           CTCGTCAAACAGTTGTATCAAAAAACCAAGCTTTCCATGGAGAGATTGGATCAGCTCTTC
JMFS020G11+           CTTGTCGAACAGTTGTATCAGAAAACCAAGCTTTCCATGGAGAGATTGGATGAGGTCTTT
JMSF047B13+           CTTGTCGAACAGTTGTATCAAAAAGCCAAGCTTTGCATGGAGAGATTGGATGAGGTCTTT
                      ____________________________________________________________
consensus             CTCGTCGAACAGTTGTATCAGAAAACCAAGCTTTGCATGGAGAGATTGGATGAGGTCTTT
 
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JMFF026P21+           GTTAAAAGGGATGAGTTCCAATCTGTTGTAGGAATGGACGAGGGTGAGGTTGCAAGAACT
JMFF020N16+           GTTAAAAGGGATGAGTTCCAAT-TGTTGTAGGAATGGACGAGGGTGAGGTTGCAAGAACT
JMFS013C12+           GTTAAAAGGGATGAGTTCCATT-TGTTGTAGGATTGGACGAGGGTGAGGTTGCAAGAACT
JMSF004C12+           ATTAAAAGGGATGAGTTCCATT-TGTTGTAGGATTGGACGAGGGTGAGGTTGCAAGAACT
JMFS020G11+           GTTAAAAGGGATGAGTTCCATT-TGTTGTAGGATTGGACGAGGCTGGGGTTGCAAGAACT
JMSF047B13+           GTTAAAAGGGATGAGTTCCATT-TCTTGTAGGAATGGACGAGGGTGAGGTTGCAAGAACT
                      ____________________________________________________________
consensus             GTTAAAAGGGATGAGTTCCATT-TGTTGTAGGATTGGACGAGGGTGAGGTTGCAAGAACT
 
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JMFF026P21+           C                                                           
JMFF020N16+           C                                                           
JMFS013C12+           CAAGCTCTAATGTTGTGATAAGAGAATTTACAGCTACACAAGCCATT             
JMSF004C12+           CAAGCTCTAATGTTGTGATAAGAGAATTTACAGCTACACAAGCCATT             
JMFS020G11+           CCAGCTCTAATGTTGTGATAAGAGAATTTACAGCTACACAAGCCATTCTTTTTTCTCT  
JMSF047B13+           CAATCTCTAATGTTGTGATAAGAGAATTTACAGCTACACAAGCCATTCTTTTCTCTCTCT
                      ____________________________________________________________
consensus             CAAGCTCTAATGTTGTGATAAGAGAATTTACAGCTACACAAGCCATTCTTTTTTCTCTCT
 
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JMSF047B13+           GTTAGTATAGGTGTAATGTAAATGAAATGAGAGTAGTTTTTCTCAGTTTGTTTGAGTGCA
                      ____________________________________________________________
consensus             GTTAGTATAGGTGTAATGTAAATGAAATGAGAGTAGTTTTTCTCAGTTTGTTTGAGTGCA
 
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JMSF047B13+           GATTAGCAGATCGAAGCAAAGCAAGATGGGTGGAATTGGGTAATGCCACTGATCTGAGTC
                      ____________________________________________________________
consensus             GATTAGCAGATCGAAGCAAAGCAAGATGGGTGGAATTGGGTAATGCCACTGATCTGAGTC