Contig 009508:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037G13Sequence678009508 (4)emb|CAD33240.1|1e-108putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]734009508 (4)ref|XP_009803762.1|2e-86PREDICTED: malate dehydrogenase, mitochondrial [Nicotiana sylvestris]
JMSF042O01Sequence789009508 (4)emb|CAD33240.1|7e-122putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]733009508 (4)ref|XP_009593526.1|1e-87PREDICTED: malate dehydrogenase, mitochondrial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF037G13- GGGTTTT
                      ____________________________________________________________
consensus GGGTTTT
 
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rJMSF037G13- TGTAGTAATAATCTTTGGAATACAAAGTTGAAAGTGATGGCGGTTGTAATATCATCCCAA
                      ____________________________________________________________
consensus TGTAGTAATAATCTTTGGAATACAAAGTTGAAAGTGATGGCGGTTGTAATATCATCCCAA
 
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rJMSF037G13- GCTCTTAGAAGTAAATTGAGTGCTATTTGAAAGAGCAAAATCTCAGGTGCCTAAAGCCCC
                      ____________________________________________________________
consensus GCTCTTAGAAGTAAATTGAGTGCTATTTGAAAGAGCAAAATCTCAGGTGCCTAAAGCCCC
 
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rJMSF037G13- TAAGAGGAATCAAAATAATTAAACTTGCATCTCAATCAAAGCAAAAGGATATGACTAATT
                      ____________________________________________________________
consensus TAAGAGGAATCAAAATAATTAAACTTGCATCTCAATCAAAGCAAAAGGATATGACTAATT
 
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rJMSF037G13- TTGGTGGGCAAACTTGATTCCCTTTTCAATGGATGCTTTCAGCTCAGGTTTAAGCTTTTC
rJMSF042O01- TGGTGGGCAAACTTGATTCCCTTTTCAATGGATGCTTTCAGCTCAGGTTTAAGCTTTTC
                      ____________________________________________________________
consensus TTGGTGGGCAAACTTGATTCCCTTTTCAATGGATGCTTTCAGCTCAGGTTTAAGCTTTTC
 
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rJMSF037G13- AAGTCCTTCCTTCTCAAAGTCCGAAAGTGTGCCCAACCCTAGGACTTCGTCAACACCATT
rJMSF042O01- AAGTCCTTCCTTCTCAAAGTCCGAAAGTGTGCCCAACCCTAGGACTTCGTCAACACCATT
                      ____________________________________________________________
consensus AAGTCCTTCCTTCTCAAAGTCCGAAAGTGTGCCCAACCCTAGGACTTCGTCAACACCATT
 
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rJMSF037G13- TTTCCCTACTCTCACCTTAGATGCAAAGAAAGGAAGTTCAGTGACAGTAGACTGCACAAA
rJMSF042O01- TTTCCCTACTCTCACCTTAGATGCAAAGAAAGGAAGTTCAGTGACAGTAGACTGCACAAA
                      ____________________________________________________________
consensus TTTCCCTACTCTCACCTTAGATGCAAAGAAAGGAAGTTCAGTGACAGTAGACTGCACAAA
 
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rJMSF037G13- AGAACACTCCACAACATCTGGAGCTCCATTGAGTCCTTTCAAGCAAGCATCCGCAAATAC
rJMSF042O01- AGAACACTCCACAACATCTGGAGCTCCATTGAGTCCTTTCAAGCAAGCATCCGCAAATAC
                      ____________________________________________________________
consensus AGAACACTCCACAACATCTGGAGCTCCATTGAGTCCTTTCAAGCAAGCATCCGCAAATAC
 
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rJMSF037G13- GGCCCCAGCGTAGGCCATAGAGAGGGTGGCTGAACCTTTCCCTGCTTTGGCTTCTACAAC
rJMSF042O01- GGCCCCAGCGTAGGCCATAGAGAGGGTGGCTGAACCTTTCCCTGCTTTGGCTTCTACAAC
                      ____________________________________________________________
consensus GGCCCCAGCGTAGGCCATAGAGAGGGTGGCTGAACCTTTCCCTGCTTTGGCTTCTACAAC
 
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rJMSF037G13- CTCTGTTCCACCATCTTGGGTTCGTTTGGTGAGCGCTACAATCTCATCATCTGACAAGTT
rJMSF042O01- CTCTGTTCCACCATCTTGGGTTCGTTTGGTGAGCGCTACAATCTCATCATCTGACAAGTT
                      ____________________________________________________________
consensus CTCTGTTCCACCATCTTGGGTTCGTTTGGTGAGCGCTACAATCTCATCATCTGACAAGTT
 
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rJMSF037G13- GGCTTTTGGAGTAGCTTGGGAAAACAGTGGGAGAATTGTTATGCCTGCATGACCACCGAC
rJMSF042O01- GGCTTTTGGAGTAGCTTGGGAAAACAGTGGGAGAATTGTTATGCCTGCATGACCACCGAC
JMSF042O01+ GGAGTAGCTTGGGAAAACAGTGGGAGAATTGTTATGCCTGCATGACCACCGAC
                      ____________________________________________________________
consensus GGCTTTTGGAGTAGCTTGGGAAAACAGTGGGAGAATTGTTATGCCTGCATGACCACCGAC
 
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rJMSF037G13- TACAGGTACATTGACCTCAGCAACATTAACTTTAGCTTTTCCAGCATAGAAAGTCTTGGC
rJMSF042O01- TACAGGTACATTGACCTCAGCAACATTAACTTTAGCTTTTCCAGCATAGAAAGTCTTGGC
JMSF037G13+ TTTCCAGCATAGAAAGTCTTGGC
JMSF042O01+ TACAGGTACATTGACCTCAGCAACATTAACTTTAGCTTTTCCAGCATAGAAAGTCTTGGC
                      ____________________________________________________________
consensus TACAGGTACATTGACCTCAGCAACATTAACTTTAGCTTTTCCAGCATAGAAAGTCTTGGC
 
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rJMSF037G13- CCTGACTACATCAAGGGTGGTAACACCAAAGAGTCTCTTTTCATCATAAGTTCC
rJMSF042O01- CCTGACTACATCAAGGGTGGTAACACCAAAGAGTCTCTTTTCATCATAAGTTCCAGCCTT
JMSF037G13+ CCTGANTACATCAAGGGTGGTAACACCAAAGAGTCTCTTTTCATCATAAGTTCCAGCCTT
JMSF042O01+ CCTGACTACATCAAGGGTGGTAACACCAAAGAGTCTCTTTTCATCATAAGTTCCAGCCTT
                      ____________________________________________________________
consensus CCTGACTACATCAAGGGTGGTAACACCAAAGAGTCTCTTTTCATCATAAGTTCCAGCCTT
 
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rJMSF042O01- TTT
JMSF037G13+ TTTGAAGACCTCAGCAGCAATTGGGACAGTGGAGTTCACAGGGTTGCTAATCATATTGAC
JMSF042O01+ TTTGAAGACCTCAGCAGCAATTGGGACAGTGGAGTTCACAGGGTTGCTAATCATATTGAC
                      ____________________________________________________________
consensus TTTGAAGACCTCAGCAGCAATTGGGACAGTGGAGTTCACAGGGTTGCTAATCATATTGAC
 
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JMSF037G13+ AAGTGCATTAGGGCAATACTTGGCAATGGCAGTGCAGAGAGATTTAACAATGCCAGCATT
JMSF042O01+ AAGTGCATTAGGGCAATACTTGGCAATGGCAGTGCAGAGAGATTTAACAATGCCAGCATT
                      ____________________________________________________________
consensus AAGTGCATTAGGGCAATACTTGGCAATGGCAGTGCAGAGAGATTTAACAATGCCAGCATT
 
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JMSF037G13+ GATGTTGAAGAGATCATCACAGGTCATGCCTGGCTTTCGTGGCACACCAGCTGGAATAAT
JMSF042O01+ GATGTTGAAGAGATCATCACGGGTCATGCCTGGCTTTCGTGGCACACCAGCTGGAATAAT
                      ____________________________________________________________
consensus GATGTTGAAGAGATCATCACGGGTCATGCCTGGCTTTCGTGGCACACCAGCTGGAATAAT
 
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JMSF037G13+ GACAACATCAGAACCCTCCAAAGCCTTCCCAAGATTTTCATCTCCCATATACCCAACAAC
JMSF042O01+ GACAACATCAGAACCCTCCAAAGCCTTCCCAAGATTTTCATCTCCCATATACCCAACAAC
                      ____________________________________________________________
consensus GACAACATCAGAACCCTCCAAAGCCTTCCCAAGATTTTCATCTCCCATATACCCAACAAC
 
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JMSF037G13+ CTCAGATCCGGTGTTGATATGGCTGACATCGGCGGCGACGCCAGGAGTACCCGCAATATC
JMSF042O01+ CTCAGATCCGGTGTTGATATGGCTGACATCGGCGGCGACGCCAGGAGTACCCGCAATATC
                      ____________________________________________________________
consensus CTCAGATCCGGTGTTGATATGGCTGACATCGGCGGCGACGCCAGGAGTACCCGCAATATC
 
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JMSF037G13+ ATAGAGCTCAAGGCGAGTAACTAGAGGATTAAGCTTCATGAGCAGCGAAAGTGGCTGACC
JMSF042O01+ ATAGAGCTCAAGGCGAGTAACTAGAGGATTAAGCTTCATGAGCAGCGAAAGTGGCTGACC
                      ____________________________________________________________
consensus ATAGAGCTCAAGGCGAGTAACTAGAGGATTAAGCTTCATGAGCAGCGAAAGTGGCTGACC
 
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JMSF037G13+ GATCCCGCCGGCAGCCCCCAAGATTGCAACTTTCCTCTCCGGAGAGGTTCCGGATGCGAA
JMSF042O01+ GATCCCGCCGGCAGCCCCCAAGATTGCAACTTTCCTCTCCGGAGAGGTTCCGGATGCGAA
                      ____________________________________________________________
consensus GATCCCGCCGGCAGCCCCCAAGATTGCAACTTTCCTCTCCGGAGAGGTTCCGGATGCGAA
 
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JMSF037G13+ CCCTCGGCGAGAAGCATTTGAAGTGGAGCTTCTGAGAATTGATCTCAGCATTGTTGATTT
JMSF042O01+ CCCTCGGCGAGAAGCATTTGAAGTGGAGCTTCTGAGAATTGATCTCAGCATTGTTGATTT
                      ____________________________________________________________
consensus CCCTCGGCGAGAAGCATTTGAAGTGGAGCTTCTGAGAATTGATCTCAGCATTGTTGATTT
 
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JMSF037G13+ CTAGTCCCCGTTTCTCAACTGCCTATTTTTTGAAGATGAACAAAAAACCAAACTGTAGAT
JMSF042O01+ CTAGTCCCCGTTTCTCAACTGCCTATTTTTTGAAGATGAACAAAAAACCAAACTGTAGAT
                      ____________________________________________________________
consensus CTAGTCCCCGTTTCTCAACTGCCTATTTTTTGAAGATGAACAAAAAACCAAACTGTAGAT
 
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JMSF037G13+ TTTTTATTTTCCTAAGAAAAGTGGAGAAGAAGAGTCAAGACTCCTGCACAGCTT
JMSF042O01+ TTTTTATTTTCCTAAGAAAAGTGGAGAAGAAGAGTCAAGACTCCTGCACAGCTTATGACC
                      ____________________________________________________________
consensus TTTTTATTTTCCTAAGAAAAGTGGAGAAGAAGAGTCAAGACTCCTGCACAGCTTATGACC