Contig 009500:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS029C07Sequence627009500 (5)
JMFS092D09Sequence630009500 (5)
JMSF021J18Sequence666009500 (5)ref|XP_009624658.1|5e-31PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X640013964 (5)ref|XP_009624659.1|3e-12PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X
JMSF028O12Sequence719009500 (5)623013964 (5)ref|XP_009624659.1|9e-17PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X
JMSF042B08Sequence459009500 (5)ref|XP_009785624.1|3e-06PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X561013964 (5)ref|XP_008378585.1|2e-11PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028O12+ TGAGA
                      ____________________________________________________________
consensus TGAGA
 
. : . : . : . : . : . :
JMSF028O12+ CATAAAGGCCGTACACAGTTCAGTAGGTGGACACTCCAAAAGTCCTGCCGCTGAAGATGC
                      ____________________________________________________________
consensus CATAAAGGCCGTACACAGTTCAGTAGGTGGACACTCCAAAAGTCCTGCCGCTGAAGATGC
 
. : . : . : . : . : . :
JMSF028O12+ AATACAAAGGAGTATGAATTTGGCACAACAAAATGTAGATATGTGAACACCAGAGTATAT
JMFS092D09+ CAGAGTATAT
                      ____________________________________________________________
consensus AATACAAAGGAGTATGAATTTGGCACAACAAAATGTAGATATGTGAACACCAGAGTATAT
 
. : . : . : . : . : . :
JMSF028O12+ ATACTATATAAAAATGAAAATCACAATAGCTAACAAGAATAATTACAGTAAATGCTAGTT
JMFS092D09+ ATTCTATATAAAAATGAAAATCACAATAGCTAACAAGAATAATTACAGTAAATGCTAGTT
JMFS029C07+ T
                      ____________________________________________________________
consensus ATTCTATATAAAAATGAAAATCACAATAGCTAACAAGAATAATTACAGTAAATGCTAGTT
 
. : . : . : . : . : . :
JMSF028O12+ AAAGACAAAAGGCTGAACAAGAAAGAAAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
JMFS092D09+ AAAGACAAAAGGCTGAACAAGAAAGAAAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
JMFS029C07+ AAAGACAAAAGGCTGAACAAGAAAGANAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
                      ____________________________________________________________
consensus AAAGACAAAAGGCTGAACAAGAAAGAAAGTTTAGCAGTGCTCTTAGTCTCTTACCAAACA
 
. : . : . : . : . : . :
JMSF028O12+ GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
JMFS092D09+ GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
JMFS029C07+ GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
                      ____________________________________________________________
consensus GTAGGCTGAAGAACTTCAAAATTTTTACCATCAAACAAACATATGCATTCTCAATTAAGA
 
. : . : . : . : . : . :
JMSF028O12+ TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
JMFS092D09+ TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
JMFS029C07+ TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
                      ____________________________________________________________
consensus TGAACAATAAAAAGATTTAAGTCCAAAGCTAATAATTTATAGAACTGTTTGAAGACAAGG
 
. : . : . : . : . : . :
JMSF028O12+ CTTGTAACAAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
JMFS092D09+ CTTGTAA-AAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
JMFS029C07+ CTTGTAA-AAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
                      ____________________________________________________________
consensus CTTGTAA-AAGACAGGAAAAAAAGCCAAAATTAAAACAGTAACTAGATTTTCAAGCCAAA
 
. : . : . : . : . : . :
JMSF028O12+ ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMFS092D09+ ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMFS029C07+ ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMSF021J18+ CGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
JMSF042B08+ TGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
                      ____________________________________________________________
consensus ACTGAAAATTGTACCGAAAAATGTGAAGAAAGAAACGAAGTAGATGAATGTATCTGGCTC
 
. : . : . : . : . : . :
JMSF028O12+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMFS092D09+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMFS029C07+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMSF021J18+ TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
JMSF042B08+ TTATCAAACATNCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
                      ____________________________________________________________
consensus TTATCAAACATGCCCTTAGATGGGCAATTGTAGCCATATTTCCCATGAATCCCCATTTCA
 
. : . : . : . : . : . :
JMSF028O12+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAA
JMFS092D09+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
JMFS029C07+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
JMSF021J18+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
JMSF042B08+ CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
                      ____________________________________________________________
consensus CGGGGCAACAGCAATGAGCTAGCAGCCGCCATTGTTGAAAACTAAGGAAGAAATTCCAGT
 
. : . : . : . : . : . :
JMFS092D09+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
JMFS029C07+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
JMSF021J18+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
JMSF042B08+ AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
                      ____________________________________________________________
consensus AAAAAAACAATCTTTATGCACATAAGGAGAGCACCTTATATTCAAGACCTAAAACACCTT
 
. : . : . : . : . : . :
JMFS092D09+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTAGG
JMFS029C07+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
JMSF021J18+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
JMSF042B08+ GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
                      ____________________________________________________________
consensus GAAATGGAAAGATTTTTTCAGCAGTTCCCGTTCGCGGAAACCGGAACAGTTTTATGTGGG
 
. : . : . : . : . : . :
JMFS092D09+ GTTGGGAATATGAAATCGCGG
JMFS029C07+ GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
JMSF021J18+ GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
JMSF042B08+ GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
                      ____________________________________________________________
consensus GTTGGGAATATGAAATCGCGGGTCGCCGCCGGAAGTGATCGGAAACTACGCTACAGTTGC
 
. : . : . : . : . : . :
JMFS029C07+ GTGCTCAAGTGGATTACA
JMSF021J18+ GTGCTCAAGTGGATTACACCAACTGTTTTGGATAATTCCTCACGGGGTTCGATGTACGGT
JMSF042B08+ GTGCTCAAGTGGATTACACCAACTGTTTTGGATAATTCCTCACGGGGTTCGATGTACGGT
                      ____________________________________________________________
consensus GTGCTCAAGTGGATTACACCAACTGTTTTGGATAATTCCTCACGGGGTTCGATGTACGGT
 
. : . : . : . : . : . :
JMSF021J18+ TAACTCTTACGTGTCACGATT
JMSF042B08+ TAACTCTTACGTGTCACGATTGGATTCAGACAAGAGAATTATTGAAAAGAAAACGTGGCC
                      ____________________________________________________________
consensus TAACTCTTACGTGTCACGATTGGATTCAGACAAGAGAATTATTGAAAAGAAAACGTGGCC