Contig 009494:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034A09Sequence551009494 (10)ref|XP_004230866.1|9e-47PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]737005519 (5)emb|CAN61314.1|7e-19hypothetical protein VITISV_013389 [Vitis vinifera]
JMFS038D01Sequence566009494 (10)gb|EYU37786.1|1e-48hypothetical protein MIMGU_mgv1a000855mg [Erythranthe guttata]
JMFS084H11Sequence618009494 (10)ref|XP_004230866.1|9e-60PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]
JMFS089B01Sequence629009494 (10)ref|XP_004230866.1|4e-62PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]
JMFS089B08Sequence619009494 (10)ref|XP_004230866.1|3e-58PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]
JMFS110B05Sequence623009494 (10)ref|XP_004230866.1|2e-65PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]
JMFS120A10Sequence628009494 (10)ref|XP_004230866.1|1e-64PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]
JMFS147G11Sequence624009494 (10)ref|XP_004230866.1|3e-61PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]
JMSF009I19Sequence342009494 (10)ref|XP_009589593.1|1e-17PREDICTED: SWI/SNF complex subunit SWI3D [Nicotiana tomentosiformis]782005519 (5)emb|CAN61314.1|3e-38hypothetical protein VITISV_013389 [Vitis vinifera]
JMSF041L02Sequence818009494 (10)ref|XP_004230866.1|4e-86PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum]692005519 (5)emb|CAN61314.1|2e-25hypothetical protein VITISV_013389 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF041L02+ GTATCAACATTCGTAGCAGAATCAGGTTGTGGGAAAGGG
                      ____________________________________________________________
consensus GTATCAACATTCGTAGCAGAATCAGGTTGTGGGAAAGGG
 
. : . : . : . : . : . :
JMSF041L02+ TGGTAATTGATCAAANCCCCAGTAGTCCAGAAACTCCATCACCTCTTGCCTTGCATCCAA
                      ____________________________________________________________
consensus TGGTAATTGATCAAANCCCCAGTAGTCCAGAAACTCCATCACCTCTTGCCTTGCATCCAA
 
. : . : . : . : . : . :
JMFS120A10+ CGTG
JMFS110B05+ CGTG
JMFS089B01+ CGTG
JMSF041L02+ CACACCAGTCGAGAGCTCAGACAAATCCTTCAATTCAATACGAGTGTTTGGGTCTGCGTG
                      ____________________________________________________________
consensus CACACCAGTCGAGAGCTCAGACAAATCCTTCAATTCAATACGAGTGTTTGGGTCTGCGTG
 
. : . : . : . : . : . :
JMFS120A10+ ATACTTTCTCATAATCAAATTGCGTATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
JMFS084H11+ TAATCAAATTGCGTATCTCCATGTACATTNCAGGAGTCCTGTTTGGAGA
JMFS147G11+ TCATAATCAAATTGCGTATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
JMFS038D01+ AGTCCTGTTTGGAGA
JMFS110B05+ ATACTTTCTCATAATCAAATTGCGTATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
JMFS089B08+ TATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
JMFS089B01+ ATACTTTCTCATAATCAAATTGCGTATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
JMSF041L02+ ATACTTTCTCATAATCAAATTGCGTATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
                      ____________________________________________________________
consensus ATACTTTCTCATAATCAAATTGCGTATCTCCATGTACATTTCAGGAGTCCTGTTTGGAGA
 
. : . : . : . : . : . :
JMFS120A10+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFS084H11+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFS147G11+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFS038D01+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFS110B05+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFF034A09+ CTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFS089B08+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMFS089B01+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
JMSF041L02+ CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
                      ____________________________________________________________
consensus CTTCCCATTAAAGAAGGATGGCATTGTTTGCTCCTCCAATGAATGAACTTTTGTCCAAGA
 
. : . : . : . : . : . :
JMFS120A10+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFS084H11+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFS147G11+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFS038D01+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFS110B05+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFF034A09+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFS089B08+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMFS089B01+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
JMSF041L02+ AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
                      ____________________________________________________________
consensus AAACCAACCAGCATGACTCGGCACCACATGAACATTAGCATCTCGAGACCTAATTGCTTC
 
. : . : . : . : . : . :
JMFS120A10+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFS084H11+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFS147G11+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFS038D01+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFS110B05+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFF034A09+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFS089B08+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMFS089B01+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
JMSF041L02+ AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
                      ____________________________________________________________
consensus AAACTCGGCTTCAATTTTTGCCTCCAACGCCTCGAAATCCTCCTTCGCTTCAATTGACGC
 
. : . : . : . : . : . :
JMFS120A10+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFS084H11+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFS147G11+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFS038D01+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFS110B05+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFF034A09+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFS089B08+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMFS089B01+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
JMSF041L02+ TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTTTGGCCAGCAGCGCCGCATCCGCCTC
                      ____________________________________________________________
consensus TTCCTCGGCCTTCCGCAGCTCCGCCCCTCCAACTCTGGCCAGCAGCGCCGCATCCGCCTC
 
. : . : . : . : . : . :
JMFS120A10+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFS084H11+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFS147G11+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFS038D01+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFS110B05+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFF034A09+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFS089B08+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMFS089B01+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
JMSF009I19+ AATTTGAGGGTGAGGCGACGGNAGCGGTGTTGCTGGGCTGCTGTCG
JMSF041L02+ GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
                      ____________________________________________________________
consensus GCTGCGGACGCCTGAATTTGAGGGTGAGGCGACGGGAGCGGTGTTGCTGGGCTGCTGTCG
 
. : . : . : . : . : . :
JMFS120A10+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFS084H11+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFS147G11+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFS038D01+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFS110B05+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFF034A09+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFS089B08+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMFS089B01+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMSF009I19+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
JMSF041L02+ AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
                      ____________________________________________________________
consensus AGCTCTGGTGCACGGACCGTTGTGGATCGGAGGAAAGGGCACCGGCGGCGGCTTTTCGCG
 
. : . : . : . : . : . :
JMFS120A10+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMFS084H11+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMFS147G11+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMFS038D01+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMFS110B05+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMFF034A09+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCATAAGGCGCT
JMFS089B08+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMFS089B01+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMSF009I19+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
JMSF041L02+ AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
                      ____________________________________________________________
consensus AGCCTGACGCTTCGAGGAAGTAGAAAGAGGAGTCGAAGTTCCACCGCTGCCTAAGGCGCT
 
. : . : . : . : . : . :
JMFS120A10+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFS084H11+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFS147G11+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFS038D01+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFS110B05+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFF034A09+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFS089B08+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMFS089B01+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMSF009I19+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
JMSF041L02+ TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
                      ____________________________________________________________
consensus TGCTTTCCGCTTCTGGCCTCCGCCCCTTCGCCGAGAAGTGGGTGGGTCCGAAGGTGGGGC
 
. : . : . : . : . : . :
JMFS120A10+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMFS084H11+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMFS147G11+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMFS038D01+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTGCCCGCCGGCGGAGTGCCGCTATCTTTAA
JMFS110B05+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMFF034A09+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMFS089B08+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMFS089B01+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTT-A
JMSF009I19+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTA-CCGCCGGCGGAGTGCCGCTATCTTTAA
JMSF041L02+ CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
                      ____________________________________________________________
consensus CTCCGCCGCCTTCTGCGGGGTTGAGAAGCTTG-CCGCCGGCGGAGTGCCGCTATCTTTAA
 
. : . : . : . : . : . :
JMFS120A10+ ACTTCTCCTCCATGAGTAAGGATTG
JMFS084H11+ ACTTCTCCTCCATGAGTAAGGATTGC
JMFS147G11+ ACTTCTCCTCCATGAGTAAGGATTGCTATGGAG
JMFS110B05+ ACTTCTCCTCCATGA
JMFF034A09+ ACTTCTCCTCCATGAGTAAGGATTGCTATGGAGCTCCTCCAC
JMFS089B08+ ACTTCTCCTCCATGAGTAAGGATTGCTATGGAGCTCCTCCAC
JMFS089B01+ ACTTCTCCTCCATGAGTAAGGATTG
JMSF009I19+ ACTTCTCCTCCATGAGTAAGGATTGCTATGGAGCTCCTCCACCGAGATCGTCG
JMSF041L02+ ACTTCTCCTCCATGAGTAAGGATTGCTATGGAGCTCCTCCACCGAGATCGTCGTCTTCCC
                      ____________________________________________________________
consensus ACTTCTCCTCCATGAGTAAGGATTGCTATGGAGCTCCTCCACCGAGATCGTCGTCTTCCC