| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026J07 | Sequence | 606 | 009489 (4) | ref|XP_010678749.1| | 2e-20 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu | 685 | 011382 (29) | ref|XP_007045674.1| | 2e-09 | F-box/RNI-like superfamily protein [Theobroma cacao] gb|EOY01506.1| F-box/RNI-li |
| JMSF038J21 | Sequence | 677 | 009489 (4) | ref|XP_010678749.1| | 9e-21 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu | 733 | 011382 (29) | ref|XP_009628123.1| | 5e-09 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to |
| JMSF041E09 | Sequence | 200 | 009489 (4) | 565 | 011382 (29) | emb|CDP17454.1| | 1e-07 | unnamed protein product [Coffea canephora] | |||
| JMSF042E08 | Sequence | 774 | 009489 (4) | ref|XP_010678749.1| | 3e-22 | PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu | 763 | 021559 | |||
This contig is upended
. : . : . : . : . : . :
JMSF042E08+ GATCCCTTTACAATCACCGAAAGACACCTCCTCAAT
____________________________________________________________
consensus GATCCCTTTACAATCACCGAAAGACACCTCCTCAAT
. : . : . : . : . : . :
JMSF042E08+ ATTAGGAATTGTGTATAGAATTCCCTTTAATATTATCACTAAATTCAACATTCTTGAAAG
____________________________________________________________
consensus ATTAGGAATTGTGTATAGAATTCCCTTTAATATTATCACTAAATTCAACATTCTTGAAAG
. : . : . : . : . : . :
JMSF042E08+ TTAATGAAGTGACACTGGGAAATATACAATTAGGGAACGGAGAATCAAAAATGAAATTGC
____________________________________________________________
consensus TTAATGAAGTGACACTGGGAAATATACAATTAGGGAACGGAGAATCAAAAATGAAATTGC
. : . : . : . : . : . :
JMSF042E08+ CCAGAAACAGTGGCTTAATTGTCCGGCACGAGAATATACACGATGGCACCATATGTTTAC
____________________________________________________________
consensus CCAGAAACAGTGGCTTAATTGTCCGGCACGAGAATATACACGATGGCACCATATGTTTAC
. : . : . : . : . : . :
JMSF042E08+ GCGAAATATACAAGCTAAGCTCCTGTAAACCATTTCTCGAAAGAAAACGACACCACCTAT
____________________________________________________________
consensus GCGAAATATACAAGCTAAGCTCCTGTAAACCATTTCTCGAAAGAAAACGACACCACCTAT
. : . : . : . : . : . :
JMSF042E08+ CTAATTCAGACTGCGGGAGAAGACAATGATGCCATGCGTAGTGTAGAGTAAATTTCTTAA
____________________________________________________________
consensus CTAATTCAGACTGCGGGAGAAGACAATGATGCCATGCGTAGTGTAGAGTAAATTTCTTAA
. : . : . : . : . : . :
JMSF042E08+ CCGGTCCAGCATGGAACATTAGAATATCATCTATTTTGTTAATAGGAGCTATACCTTTCT
JMSF038J21+ AGAATATCATTTATTGTGNTAATCTGAGCCATACCTTTCT
____________________________________________________________
consensus CCGGTCCAGCATGGAACATTAGAATATCATTTATTTTGTTAATCTGAGCTATACCTTTCT
. : . : . : . : . : . :
JMSF042E08+ CACCTTTGTCCTTTGAGAAGGATCCGAAGAAGCACCAATCAAACACAAGTCGCCCATGCC
JMSF038J21+ CACCTTCGTACTTTGAGAAGCATTCGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCC
JMFF026J07+ CTTCGTACTTTGAGAAGCATTCGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCC
____________________________________________________________
consensus CACCTTCGTACTTTGAGAAGCATTCGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCC
. : . : . : . : . : . :
JMSF042E08+ GCACCCAAACATTGTTCCAGTGAGTTGAGAGCAGAGCAGTTCTGGCAGCCTCTTGAACAG
JMSF038J21+ GCAACCAAACATCGTTCCAGTGAGTCGAGAGCAGAGCAGTTCTGGCCGCGTCTCGAGTAG
JMFF026J07+ GCAACCAAACATCGTTCCAGTGAGTCGAGAGCAGAGCAGTTCTGGCCGCGTCTCGAGTAG
____________________________________________________________
consensus GCAACCAAACATCGTTCCAGTGAGTCGAGAGCAGAGCAGTTCTGGCCGCGTCTCGAGTAG
. : . : . : . : . : . :
JMSF042E08+ ACAAACACTCCAAAATCCTTTCCTTCACTTCTGCGGGTAGTTCACTTATCAGATCCCTTC
JMSF038J21+ GCAAGCACTCCAAAATCCTTTCCTTCACTTNTGCTGGCAGTTCACTTATTGCATCCATTC
JMFF026J07+ GCAAGCACTCCAAAATCCTTTCCTTCACTTCTGCTGGCAGTTCACTTATTGCATCCATTC
____________________________________________________________
consensus GCAAGCACTCCAAAATCCTTTCCTTCACTTCTGCTGGCAGTTCACTTATTGCATCCATTC
. : . : . : . : . : . :
JMSF042E08+ CGGCATCCGCTTCGGATTTTCTCCGACGACGACTCGCCATTAAACCGGAAAC
JMSF038J21+ CTGCACCCGCTTCGGATTTTCTTNGACGACAACTCGCCATTAAACTGGAAACCAAAGATA
JMFF026J07+ CTGCACCCGCTTCGGATTTTCTTCGACGACAACTCGCCATTAAACTGGAAACCAAAGATA
JMSF041E09+ TAAACTGGAAACCAAAGATA
____________________________________________________________
consensus CTGCACCCGCTTCGGATTTTCTTCGACGACAACTCGCCATTAAACTGGAAACCAAAGATA
. : . : . : . : . : . :
JMSF038J21+ AAATCG
JMFF026J07+ AAATCGCTCGATCCCCATTCCAATTCAGTTCACTAGATGATGGAAACAAAAGAAATTTCG
JMSF041E09+ AAATCGCTCGATCCCCATTCCAATTCAGTTCACTAGATGATGGAAACAAAAGAAATTTCG
____________________________________________________________
consensus AAATCGCTCGATCCCCATTCCAATTCAGTTCACTAGATGATGGAAACAAAAGAAATTTCG
. : . : . : . : . : . :
JMFF026J07+ AAGAATTTGGGAAGAAAAAAAGAGATTAGGGAAAATGTGTCAGAAACCCTCGCCTTCTCT
JMSF041E09+ AAGAATTTGGGAAGAAAAAAAGAGATTAGGGAAAATGTGTCAGAAACCCTCGCCTTCTCT
____________________________________________________________
consensus AAGAATTTGGGAAGAAAAAAAGAGATTAGGGAAAATGTGTCAGAAACCCTCGCCTTCTCT
. : . : . : . : . : . :
JMFF026J07+ GCTCCACTGTCTACTGACTGGATATTT
JMSF041E09+ GCTCCACTGTCTACTGACTGGATATTTTGACTTTTGAGTTTGGAAATGGGAAGAATATCC
____________________________________________________________
consensus GCTCCACTGTCTACTGACTGGATATTTTGACTTTTGAGTTTGGAAATGGGAAGAATATCC