clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF027E10 | Sequence | 531 | 006031 (3) | ref|XP_004236745.1| | 1e-42 | PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum] | 466 | 009467 (7) | |||
JMFF035P03 | Sequence | 527 | 006031 (3) | gb|AIU96237.1| | 1e-07 | serine/threonine-protein kinase BIK1, partial [Nicotiana benthamiana] | 632 | 009467 (7) | ref|XP_009759469.1| | 1e-26 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] |
JMFF051M11 | Sequence | 648 | 006031 (3) | ref|XP_004236745.1| | 1e-65 | PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum] | 381 | 009467 (7) | |||
JMFS060A01 | Sequence | 629 | 009467 (7) | gb|EYU33216.1| | 3e-131 | hypothetical protein MIMGU_mgv1a011111mg [Erythranthe guttata] | |||||
JMSF012A20 | Sequence | 250 | 009467 (7) | gb|AIU96237.1| | 4e-08 | serine/threonine-protein kinase BIK1, partial [Nicotiana benthamiana] | 785 | 012699 (3) | ref|XP_009759469.1| | 7e-70 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] |
JMSF037H23 | Sequence | 649 | 009467 (7) | ref|XP_009759469.1| | 1e-93 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] | 576 | 012699 (3) | emb|CDP00097.1| | 2e-16 | unnamed protein product [Coffea canephora] |
JMSF038H23 | Sequence | 679 | 009467 (7) | ref|XP_004236745.1| | 1e-101 | PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum] | 869 | 012699 (3) | ref|XP_009759469.1| | 2e-68 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF051M11- CCTTATGGCGGATCACCCTGGAGAG
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAG
. : . : . : . : . : . :
rJMFF051M11- TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTAAAACATCGAACTCTTTTTTACTTTTTTTT
____________________________________________________________
consensus TTTTTTTTTTTTTTCTTTTTTTTTTTTTTTAAAACATCGAACTCTTTTTTACTTTTTTTT
. : . : . : . : . : . :
rJMFF051M11- TTTGGGGTGCACAAAATACAGCAAAGAACTGTACAAAACTAACGGTAGATTAGTCTAATA
rJMFF035P03- AAACTAACGGTAGATTAGTCTAATA
____________________________________________________________
consensus TTTGGGGTGCACAAAATACAGCAAAGAACTGTACAAAACTAACGGTAGATTAGTCTAATA
. : . : . : . : . : . :
rJMFF051M11- CAGGTCCAAGATCCTGAAATGATAAACTGTGGGCATGTTCTTCTCTATAAGCTAATGTAT
rJMFF027E10- GGTCCAAAATCCTGAAATGANAAANTGNGGGCATGTTCTTCTCTATAANCTAATGNAT
rJMFF035P03- CAGGTCCAAGATCCTGAAATGATAAACTGTGGGCATGTTCTTCTCTATAAGCTAATGTAT
____________________________________________________________
consensus CAGGTCCAAGATCCTGAAATGATAAACTGTGGGCATGTTCTTCTCTATAAGCTAATGTAT
. : . : . : . : . : . :
rJMFF051M11- ACAGTATAATAAGATGTGTTGATTCTCAGTGTTCATGCAACAATGGCAAAAGCAGAGGTT
rJMFF027E10- ACAGNATAATAAAATGNGTTNATTCTCAGGGTTCNTGCAACAANGGCAAAANCAAAGGTT
rJMFF035P03- ACAGTATAATAAGATGTGTTGATTCTCAGTGTTCATGCAACAATGGCAGAAGCAGAGGTT
____________________________________________________________
consensus ACAGTATAATAAGATGTGTTGATTCTCAGTGTTCATGCAACAATGGCAAAAGCAGAGGTT
. : . : . : . : . : . :
rJMFF051M11- GTTGCACAAGCAGCATTGTTTCCTCTTGAAGCTTCTTCAATGGCGCAGGATCTCTGAGGG
rJMFF027E10- GTTGCNCAANCANCATTGTTNCCTCTTNAANNTTCTTCAANGGCNCAGGATCTCTGAGGG
rJMFF035P03- GTTGCACAAGCAGCATTGTTTCCTCTTGAAGCTTCTTCAATGGCGCAGGATCTCTGAGGG
____________________________________________________________
consensus GTTGCACAAGCAGCATTGTTTCCTCTTGAAGCTTCTTCAATGGCGCAGGATCTCTGAGGG
. : . : . : . : . : . :
rJMFF051M11- TTCTCGATCGCTTCCTGTTTGAGATTCTCTATGCTGCCATTCGAGTCTTCCTTGTT
rJMFF027E10- TTCTCAATCNCTTCCNGTTTNAAATTCTCNATGCTGCCATTCAAGTCTTCCTTGTTTCNA
rJMFF035P03- TTCTCGATCGCTTCCTGTTTGAGATTCTCTATGCTGCCATTCGAGTCTTCCTTGTTTCTA
____________________________________________________________
consensus TTCTCGATCGCTTCCTGTTTGAGATTCTCTATGCTGCCATTCGAGTCTTCCTTGTTTCTA
. : . : . : . : . : . :
rJMFF027E10- CTCAAANCTTCTTCAANGGCNCGGNATCTCNGGGGATTCNCAATCACTTCCTGTTTNAAA
rJMFF035P03- CTCGAAGCTTCTTCAATGGCGCGGGATCTCTGGTGATTCTCGATCACTTCCTGTTTGAGA
____________________________________________________________
consensus CTCGAAGCTTCTTCAATGGCGCGGGATCTCTGGTGATTCTCGATCACTTCCTGTTTGAGA
. : . : . : . : . : . :
rJMFF027E10- CTCTCTGNGCTGCCATTCCTTGAANCTTCTTCAANGGCNCGGNATCTCTGANGGTTCTTG
rJMFF035P03- CTCTCTGTGCTGCCATTCCTTGAAGCTTCTTCAATGGCGCGGGATCTCTGATGGTTCTTG
____________________________________________________________
consensus CTCTCTGTGCTGCCATTCCTTGAAGCTTCTTCAATGGCGCGGGATCTCTGATGGTTCTTG
. : . : . : . : . : . :
rJMFF027E10- ATCNCTTCCTGTTNGGNACTCCCTGNGCTGCTGCCATTCNAGTCTTGAANNTTTTCAAGC
rJMFF035P03- ATCGCTTCCTGTTTGGGACTCGCTGTGCTGCTGCCATTCGAGTCTTGAAGCTTTTCAAGC
____________________________________________________________
consensus ATCGCTTCCTGTTTGGGACTCGCTGTGCTGCTGCCATTCGAGTCTTGAAGCTTTTCAAGC
. : . : . : . : . : . :
rJMFF027E10- TCCNCTACCACCTCGTTCATGTCAGGCCTTGATTTGGGGNCGGG
rJMFF035P03- TCCGCTACCACCTCGTTCATGTCAGGCCTTGATTTGGGGTCGGGCGTTATGCATTTCACT
JMFS060A01+ TTGGGGTCGGGCGTTATGCATTTCACT
____________________________________________________________
consensus TCCGCTACCACCTCGTTCATGTCAGGCCTTGATTTGGGGTCGGGCGTTATGCATTTCACT
. : . : . : . : . : . :
rJMFF035P03- GCGAGGAGTGCTACTCGGAGCGCTCCACTCAACGAGTACTGCCCTTGGATACGAGGATCC
JMFS060A01+ GCGAGGAGTGCTACTCGGAGCGCTCCACTCAACGAGTACTGCCCTTGGATACGAGGATCC
____________________________________________________________
consensus GCGAGGAGTGCTACTCGGAGCGCTCCACTCAACGAGTACTGCCCTTGGATACGAGGATCC
. : . : . : . : . : . :
rJMFF035P03- ATGACTCGGAGGATTTTGCGGTTGCTGGCGAGGTAAGGCTTAGCCCAGTCAATGAGGTTT
JMFS060A01+ ATGACTCGGAGGATTTTGCGGTTGCTGGCGAGGTAAGGCTTAGCCCAGTCAATGAGGTTT
____________________________________________________________
consensus ATGACTCGGAGGATTTTGCGGTTGCTGGCGAGGTAAGGCTTAGCCCAGTCAATGAGGTTT
. : . : . : . : . : . :
rJMFF035P03- TGTTCCC
JMFS060A01+ TGTTCCCCATTGGGTCGGTTTGTGTCCACTACTCGACGGCCCGTCAGCATTTCTAGAAGC
____________________________________________________________
consensus TGTTCCCCATTGGGTCGGTTTGTGTCCACTACTCGACGGCCCGTCAGCATTTCTAGAAGC
. : . : . : . : . : . :
JMFS060A01+ ACGACCCCGAAACTATACACATCGCTACTTGGAGTCAAGTGACCTGTGGCCATATACTCG
____________________________________________________________
consensus ACGACCCCGAAACTATACACATCGCTACTTGGAGTCAAGTGACCTGTGGCCATATACTCG
. : . : . : . : . : . :
JMFS060A01+ GGAGCTGCATAGCCATATGTACCCATAATTCTCGTAGAGACGTGACTTTCTCCTTCGATA
____________________________________________________________
consensus GGAGCTGCATAGCCATATGTACCCATAATTCTCGTAGAGACGTGACTTTCTCCTTCGATA
. : . : . : . : . : . :
JMFS060A01+ GGCCCATCCTTAGCCAATCCAAAATCAGAAAGTTTTGCGTTGTAGTTAGAGTCGATCAAA
____________________________________________________________
consensus GGCCCATCCTTAGCCAATCCAAAATCAGAAAGTTTTGCGTTGTAGTTAGAGTCGATCAAA
. : . : . : . : . : . :
JMFS060A01+ ACGTTAGACGATTTGAAATCACGATATATAACTTTTGCCTCGGGGCCGTGAAGATATGCA
____________________________________________________________
consensus ACGTTAGACGATTTGAAATCACGATATATAACTTTTGCCTCGGGGCCGTGAAGATATGCA
. : . : . : . : . : . :
JMFS060A01+ AGTCCCTTGGCTGCGCCAAGAGCAACCTTCATTCTAAGATTCCAAGATAGCGGTTGAAAG
JMSF038H23+ CCAAGATAGTGGTTGAAAG
____________________________________________________________
consensus AGTCCCTTGGCTGCGCCAAGAGCAACCTTCATTCTAAGATTCCAAGATAGTGGTTGAAAG
. : . : . : . : . : . :
JMFS060A01+ TAAGAACTCCTTCTGAACAGATGATTCTCCAAACTTCCCCGAGGCATGAACTCATACACC
JMSF038H23+ TAAGAACTCCTTCTGAATAGATGATTTTCCAAACTTCCACGAGGCATGAATTCATACACC
JMSF037H23+ TCTGAATAGATGATTTTCCAAACTTCCACGAGGCATGAATTCATACACC
____________________________________________________________
consensus TAAGAACTCCTTCTGAATAGATGATTTTCCAAACTTCCACGAGGCATGAATTCATACACC
. : . : . : . : . : . :
JMFS060A01+ AGAATTCGGTGGTCATCCTCTAAGCAGTAACCTATCAACTTCACGAGATTGGGATG
JMSF038H23+ AGAAGCCTGTGTTCATCCTCCAAGCAGTAGCCAATCAATTTTACGAGATTAGGATGAGAT
JMSF037H23+ AGAAGCCTGTGTTCATCCTCCAAGCAGTAGCCAATCAATTTTACGAGATTAGGATGAGAT
____________________________________________________________
consensus AGAAGCCTGTGTTCATCCTCCAAGCAGTAGCCAATCAATTTTACGAGATTAGGATGAGAT
. : . : . : . : . : . :
JMSF038H23+ AGCTGCCCCAGATAAGTGATTTCTGCCAGCCATTCCTTATGACCTTGGAAACCTTCTTGA
JMSF037H23+ AGCTGCCCCAGATAAGTGATTTCTGCCAGCCATTCCTTATGACCTTGGAAACCTTCTTGA
____________________________________________________________
consensus AGCTGCCCCAGATAAGTGATTTCTGCCAGCCATTCCTTATGACCTTGGAAACCTTCTTGA
. : . : . : . : . : . :
JMSF038H23+ TTCAGTCTCTTTGCAGCAATAACCAACCCAGTACCGGGCCTAGCTGCCTTAAAGGTGTTC
JMSF037H23+ TTCAGTCTCTTTGCAGCAATAACCAACCCAGTACCGGGCCTAGCTGCCTTAAAGGTGTTC
____________________________________________________________
consensus TTCAGTCTCTTTGCAGCAATAACCAACCCAGTACCGGGCCTAGCTGCCTTAAAGGTGTTC
. : . : . : . : . : . :
JMSF038H23+ TCGTCAACCCATCCCTTAAAGACGCAACCAAAACCGCCTTCACCCAACACACTATCGGGC
JMSF037H23+ TCGTCAACCCATCCCTTAAAGACGCAACCAAAACCGCCTTCACCCAACACACTATCGGGC
____________________________________________________________
consensus TCGTCAACCCATCCCTTAAAGACGCAACCAAAACCGCCTTCACCCAACACACTATCGGGC
. : . : . : . : . : . :
JMSF038H23+ CGGAAGTTTCGAGTGGCTATTCTGAGTTCATTAAAAGTGAAACCCTTGAGATTCGACGAC
JMSF012A20+ GAC
JMSF037H23+ CGGAAGTTTCGAGTGGCTATTCTGAGTTCATTAAAAGTGAAACCCTTGAGATTCGACGAC
____________________________________________________________
consensus CGGAAGTTTCGAGTGGCTATTCTGAGTTCATTAAAAGTGAAACCCTTGAGATTCGACGAC
. : . : . : . : . : . :
JMSF038H23+ TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
JMSF012A20+ TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
JMSF037H23+ TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
____________________________________________________________
consensus TCCAAAATTTCACTCTCACTCCGAGGGGTCAATGGCACCGAGGGCGATGAAAGCCTGTTA
. : . : . : . : . : . :
JMSF038H23+ CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
JMSF012A20+ CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
JMSF037H23+ CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
____________________________________________________________
consensus CTTAAACCACCTGCCCCAGCATGAAGGGGACTCTCTGCCTTAATCCTGGCACTGCAAGAA
. : . : . : . : . : . :
JMSF038H23+ GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
JMSF012A20+ GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
JMSF037H23+ GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
____________________________________________________________
consensus GACCCCATAAATTAAACCCACCAAAGCTTCAATCTTTTCTGTTCCTCCTTCAAGAAAATG
. : . : . : . : . : . :
JMSF038H23+ GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
JMSF012A20+ GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
JMSF037H23+ GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
____________________________________________________________
consensus GCCTCTCTCTCTCTCTGTCTCTCTCACAGAGGCCCTATAAAATAGTGGAAGTTCTTGAAG
. : . : . : . : . : . :
JMSF038H23+ GATTCTTTACATCCAGAAAAGGGGAAAAAATAAATAAGCCCACAACCAACCACCTTAACC
JMSF012A20+ GATTCT
JMSF037H23+ GATTCTTTACATCCAGAAAAGGGGAAAAAATAAATAAGCCCACAACCAACCACCTTAACC
____________________________________________________________
consensus GATTCTTTACATCCAGAAAAGGGGAAAAAATAAATAAGCCCACAACCAACCACCTTAACC