Contig 009466:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMCP009A04+                                                  AAAGAAagTTgttATGAAgt
rJMFF042A15-                                                              AATGAACA
                      ____________________________________________________________
consensus                                                     AAAGAATCTTCAAATGAACA
 
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rJMCP009A04+          aTTTTTGCtgTAGTTTaagagtcCgttGaCTGTAcCTATGAGGGGGCCggaGTTAcCTAT
rJMFF042A15-          TTTTTTGCACTAGTTTTTCTCAGCCAAGTCTGTAGCTATGAGGGGGCCCCTGTTAGCTAT
rJMSF037G23-                                    AGTCTGTAGCTATGAGGGGGCCCCTGTTAGCTAT
                      ____________________________________________________________
consensus             TTTTTTGCACTAGTTTTTCTCAGCCAAGTCTGTAGCTATGAGGGGGCCCCTGTTAGCTAT
 
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rJMCP009A04+          ATTTGTTATTGTagTGTAGTATTATAatgttccGGgtaTTTATGGTAACggaGgtaTACC
rJMFF042A15-          ATTTGTTATTGTTCTGTAGTATTATATACAAGGGGCATTTTATGGTAACCCTGCATTACC
rJMSF037G23-          ATTTGTTATTGTTCTGTAGTATTATATACAAGGGGCATTTTATGGTAACCCTGCATTACC
                      ____________________________________________________________
consensus             ATTTGTTATTGTTCTGTAGTATTATATACAAGGGGCATTTTATGGTAACCCTGCATTACC
 
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rJMCP009A04+          TCgtgtttcTAAATAAAagcTCGAAAAgtgtaATATTAGACTgttgtcgaACGCTgatct
rJMFF042A15-          TCCACAAAGTAAATAAATCGTCGAAAACACATATATTAGACTCAACAGCTACGCACTAGA
rJMSF037G23-          TCCACAAAGTAAATAAATCGTCGAAAACACATATATTAGACTCAACAGCTACGCTCTAGA
                      ____________________________________________________________
consensus             TCCACAAAGTAAATAAATCGTCGAAAACACATATATTAGACTCAACAGCTACGCTCTAGA
 
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rJMCP009A04+          tttcggttacCTTCTTTCGCTGG                                     
rJMFF042A15-          AAAGCCAATGCTTCTTTCGCTGGATTCTGGGTTGAACCTCTCCAGTTTCATATAATGAAT
rJMSF037G23-          AAAGCCAATGCTTCTTTCGCTGGATTCTGGGTTGAACCTCTCCAGTTTCATATAATGAAT
                      ____________________________________________________________
consensus             AAAGCCAATGCTTCTTTCGCTGGATTCTGGGTTGAACCTCTCCAGTTTCATATAATGAAT
 
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rJMFF042A15-          TGTAGTGTACCTCGCTCCAAAAGCTCAGCCATAATTCTTTAGAAGGTTGGGTGTCCTTGG
rJMSF037G23-          TGTAGTGTACCTCGCTCCAAAAGCTCAGCCATAATTCTTTAGAAGGTTGGGTGTCCTTGG
                      ____________________________________________________________
consensus             TGTAGTGTACCTCGCTCCAAAAGCTCAGCCATAATTCTTTAGAAGGTTGGGTGTCCTTGG
 
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rJMFF042A15-          GAAGGATCTCAATGTAACAGGTGTCTCGAAAGGAAGTTACTAAACATATTTTAGCTCCAA
rJMSF037G23-          GAAGGATCTCAATGTAACAGGTGTCTCGAAAGGAAGTTACTAAACATATTTTAGCTCCAA
                      ____________________________________________________________
consensus             GAAGGATCTCAATGTAACAGGTGTCTCGAAAGGAAGTTACTAAACATATTTTAGCTCCAA
 
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rJMFF042A15-          ATCGGTCTGCTGCAGCTTGGAGAGTAACATGATCTCCCCATTCCCCTGTTCTCTTCATCT
rJMSF037G23-          ATCGGTCTGCTGCAGCTTGGAGAGTAACATGATCTCCCCATTCCCCTGTTCTCTTCATCT
JMSF037G23+               GTCTGCTGCAGCTTGGAGAGTAACATGATCTCCCCATTCCCCTGTTCTCTTCATCT
                      ____________________________________________________________
consensus             ATCGGTCTGCTGCAGCTTGGAGAGTAACATGATCTCCCCATTCCCCTGTTCTCTTCATCT
 
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rJMFF042A15-          TCTTCAAGTAGCTTTTATACTTCATTGGAACGTAACCTTCATATAGCTTTCTGTAATGTT
rJMSF037G23-          TCTTCAAGTAGCTTTTATACTTCATTGGAACGTAACCTTCATATAGCTTTCTGTAATGTT
JMSF037G23+           TCTTCAAGTAGCTTTTATACTTCATTGGAACGTAACCTTCATATAGCTTTCTGTAATGTT
                      ____________________________________________________________
consensus             TCTTCAAGTAGCTTTTATACTTCATTGGAACGTAACCTTCATATAGCTTTCTGTAATGTT
 
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rJMFF042A15-          TTAGCTGTTTGACAACCCGCTTTCTTACATACTTGTGGTAATCTTGATTTCTATAAAGCT
rJMSF037G23-          TTAGCTGTTTGACAACCTGCTTTCTTACATACTTGTGGTAATCTTGATTTCTATAAAGCT
JMSF037G23+           TTAGCTGTTTGACAACCTGCTTTCTTACATACTTGTGGTAATCTTGATTTCTATAAAGCT
                      ____________________________________________________________
consensus             TTAGCTGTTTGACAACCTGCTTTCTTACATACTTGTGGTAATCTTGATTTCTATAAAGCT
 
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rJMFF042A15-          GATCTGAAAGGGCTCGGAACTGGCAATTCCCATCTCCCTGAATTTGAATTTCAGTA    
rJMSF037G23-          GATCTGAAAGGGCTCGGAACTGGCAATTCCCATCTCCCTGAATTTGAATTTCAGTAAGAT
JMSF037G23+           GATCTGAAAGGGCTCGGAACTGGCAATTCCCATCTCCCTGAATTTGAATTTCAGTAAGAT
                      ____________________________________________________________
consensus             GATCTGAAAGGGCTCGGAACTGGCAATTCCCATCTCCCTGAATTTGAATTTCAGTAAGAT
 
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rJMSF037G23-          CATATGTTTCCAACCTGCCA                                        
JMSF037G23+           CATATGTTTCCAACCTGCCAGAAAGCCTTGAGTGGTCTAATGTGGCATCATTTGTATCAG
                      ____________________________________________________________
consensus             CATATGTTTCCAACCTGCCAGAAAGCCTTGAGTGGTCTAATGTGGCATCATTTGTATCAG
 
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JMSF037G23+           GTATCTCTCCAATTACCCTTGGGGTGTGCGGAATTGAGTCTAGATGAGAAAGCCTCTTTC
                      ____________________________________________________________
consensus             GTATCTCTCCAATTACCCTTGGGGTGTGCGGAATTGAGTCTAGATGAGAAAGCCTCTTTC
 
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JMSF037G23+           CAAGCTTGCCCATGCGCTGCTGCAAAGCATTTTCCTCCTCAGCTAATATCTTAGCAATAG
                      ____________________________________________________________
consensus             CAAGCTTGCCCATGCGCTGCTGCAAAGCATTTTCCTCCTCAGCTAATATCTTAGCAATAG
 
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JMSF037G23+           TATGATCATCCTCCGTACCCAATGAATTGCTGTTCAAACTAGCACTGGAAATCGAGCTTG
                      ____________________________________________________________
consensus             TATGATCATCCTCCGTACCCAATGAATTGCTGTTCAAACTAGCACTGGAAATCGAGCTTG
 
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JMSF037G23+           AGGAGCTTGCCCTTGAATTCCCATATTGTTCATTCATCATAAAATCAAGAAGAGGAAAGG
                      ____________________________________________________________
consensus             AGGAGCTTGCCCTTGAATTCCCATATTGTTCATTCATCATAAAATCAAGAAGAGGAAAGG
 
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JMSF037G23+           ATAAGCTTTGAATTGGACTAAACTTTTCTATAGCTTCCACAGCAAAATGAGAAGAAAGCC
                      ____________________________________________________________
consensus             ATAAGCTTTGAATTGGACTAAACTTTTCTATAGCTTCCACAGCAAAATGAGAAGAAAGCC