Contig 009460:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051B18Sequence498009460 (4)ref|XP_008362638.1|169PREDICTED: uncharacterized protein LOC103426324 [Malus domestica]533012486 (3)gb|KEH28369.1|5e-30Cyclin 4 [Medicago truncatula]
JMSF036O11Sequence615009460 (4)ref|XP_004172976.1|1e-71PREDICTED: uncharacterized LOC101215534, partial [Cucumis sativus]758012486 (3)ref|XP_011080459.1|266PREDICTED: uncharacterized protein LOC105163715 [Sesamum indicum]
JMSF051A15Sequence664009460 (4)gb|KJB35660.1|2e-108hypothetical protein B456_006G1227002, partial [Gossypium raimondii] gb|KJB35661756012486 (3)ref|XP_009769256.1|300PREDICTED: uncharacterized protein LOC104220139 [Nicotiana sylvestris] ref|XP_00
JMSF052F20Sequence663009460 (4)ref|XP_011080459.1|372PREDICTED: uncharacterized protein LOC105163715 [Sesamum indicum]

Alignment

This contig is upended


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JMSF052F20+                                                                 CATATA
                      ____________________________________________________________
consensus                                                                   CATATA
 
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JMSF052F20+           AGTTTTGAGCGTTCTCCTCGCCCCTCTTTCTCATTGCCAACTCTTTCTGAAGCTGTAGTG
                      ____________________________________________________________
consensus             AGTTTTGAGCGTTCTCCTCGCCCCTCTTTCTCATTGCCAACTCTTTCTGAAGCTGTAGTG
 
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JMSF052F20+           AATGCTTGGACTTCTCTGCAAGCTGAGCTCTCAATGCTTGAAGTTCATGTTCCATATCCA
                      ____________________________________________________________
consensus             AATGCTTGGACTTCTCTGCAAGCTGAGCTCTCAATGCTTGAAGTTCATGTTCCATATCCA
 
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JMSF052F20+           TAACCTTGCTAGGCTGATGCAGCATTTTGATACGCCTAGCCTCTTGAACTTCCTTCATCA
                      ____________________________________________________________
consensus             TAACCTTGCTAGGCTGATGCAGCATTTTGATACGCCTAGCCTCTTGAACTTCCTTCATCA
 
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JMSF052F20+           ATTCTTCCAAATCCTGATTTCCTGAGGCTCGGGATATTTGTTCAAACTCTTGAAGAGATT
                      ____________________________________________________________
consensus             ATTCTTCCAAATCCTGATTTCCTGAGGCTCGGGATATTTGTTCAAACTCTTGAAGAGATT
 
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JMSF052F20+           CTTCAACCCTCTGAACCGCTGCTCTTGCATTCTCAATTTCAGCCCTAGCAAAAGCTCTTT
JMSF051A15+             TCAACCCTTTGAACGGCTGCTCTTGCATTCTCTATTTCAGTCCTTGCAAAAGCTCTTT
                      ____________________________________________________________
consensus             CTTCAACCCTTTGAACGGCTGCTCTTGCATTCTCTATTTCAGTCCTTGCAAAAGCTCTTT
 
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JMSF052F20+           CTTCATCAACGAGTCTTTTAGCATCTTCTGAAGCCTGCTTAAGAAAACTTGCGAGCTTTT
JMSF051A15+           CTTCATCAACAAGTTTTTTAGCATCGTCAGAAGCCTGCTTGATAAAAGTTGCAAGCTTTT
                      ____________________________________________________________
consensus             CTTCATCAACGAGTTTTTTAGCATCTTCTGAAGCCTGCTTGATAAAAGTTGCGAGCTTTT
 
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JMSF052F20+           TTACTTCTGTCTTTTCTTGAATCAATTCTCCTTCTCTCTCAGTTAATTGAAATGCCAAAG
JMSF051A15+           TCACTTCTGACTTTTCTTGAACCAATTCTCCTTCTCTCTCAGTCAGCTGAACTGCTAAAG
JMSF036O11+                                                                   AAAG
                      ____________________________________________________________
consensus             TTACTTCTGTCTTTTCTTGAATCAATTCTCCTTCTCTCTCAGTTAGTTGAACTGCTAAAG
 
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JMSF052F20+           CTTCAACCATTGCAATAGCCTCTTCAACATCATCCTTGTTTCTACCTGCCACACGCCCTC
JMSF051A15+           CTTCAACCATTGAAATAGCCTCCTCAACGTCATCCTTGTTTCTACCCACCACACGCCCTC
JMFF051B18+                                               TGTTTCTACCCACCACACGCCCTC
JMSF036O11+           CTTCAACCATTGAAATAGCCTCCTCAACGTCATCCTTGTTTCTACCCACCACACGCCCTC
                      ____________________________________________________________
consensus             CTTCAACCATTGAAATAGCCTCCTCAACGTCATCCTTGTTTCTACCCACCACACGCCCTC
 
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JMSF052F20+           TCAAAGCTTCAAGTGCATCTCTGAGCTTCTTTAAAAGAACATGTTTCTCAAGCGAAGCTG
JMSF051A15+           TCAGAGCTTCTAGTGCATCTCTAAGCTTCTTTAGAAGCACATGTTTCTCAAGTGAAGCTG
JMFF051B18+           TCAGAGCTTNTAGTGCATCTCTAAGCTTCTTTAGAAGCACATGTTTCTCAAGTGAAGCTG
JMSF036O11+           TCAGAGCTTCTAGTGCATCTCTAAGCTTCTTTAGAAGCACATGTTTCTCAAGTGAAGCTG
                      ____________________________________________________________
consensus             TCAGAGCTTCTAGTGCATCTCTAAGCTTCTTTAGAAGCACATGTTTCTCAAGTGAAGCTG
 
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JMSF052F20+           CTCCTTTGAGTCTTGCCTCATCAGACAATTTGGCAGCAGCAGCCAGACCCTTCTCGAATT
JMSF051A15+           CTTCCCTCAGCCTAGCCTCATCGGACAATTTGGCAGCAGCAGCCAGACCTTTCTCGAATT
JMFF051B18+           CTTCCCTCAGCCTAGCCTCATCGGACAATTTGGCAGCAGCAGCCAGACCTTTCTCGAATT
JMSF036O11+           CTTCCCTCAGCCTAGCCTCATCGGACAATTTGGCAGCAGCAGCCAGACCTTTCTCGAATT
                      ____________________________________________________________
consensus             CTTCCCTCAGCCTAGCCTCATCGGACAATTTGGCAGCAGCAGCCAGACCTTTCTCGAATT
 
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JMSF052F20+           TGCTGGCCAGATCACGAACTGACAGTCGTTTTTCCTGGTCAAGCAA              
JMSF051A15+           TACTGGCTAGATCACGAACTGATAGCCGATTTTGCTGGTCAAGCAAATGGGCAGTCTCTC
JMFF051B18+           TACTGGCTAGATCACGAACTGATAGCCGATTTTGCTGGTCAAGCAAATGGGCAGTCTCTC
JMSF036O11+           TACTGGCTAGATCACGAACTGATAGCCGATTTTGCTGGTCAAGCAAATGGGCAGTCTCTC
                      ____________________________________________________________
consensus             TACTGGCTAGATCACGAACTGATAGCCGATTTTGCTGGTCAAGCAAATGGGCAGTCTCTC
 
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JMSF051A15+           GAGCAACCACCTCCTTCACTGAGAGTGCCTTAGGATGATCCTTCAACTCCACTATCTGAT
JMFF051B18+           GAGCAACCACCTCCTTCACTGAGAGTGCCTTAGGATGATCCTTCAACTCCACTATCTGAT
JMSF036O11+           GAGCAACCACCTCCTTCACTGAGAGTGCCTTAGGATGATCCTTCAACTCCACTATCTGAT
                      ____________________________________________________________
consensus             GAGCAACCACCTCCTTCACTGAGAGTGCCTTAGGATGATCCTTCAACTCCACTATCTGAT
 
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JMSF051A15+           AATCTGATCCAATTTTATAATTGGAAAATCGGCTCGAATGGAAGATCACATCAGCTGAAA
JMFF051B18+           AATCTGATCCAATTTTATAATTGGAAAATCGGCTCGAATGGAAGATCACATCAGCTGAAA
JMSF036O11+           AATCTGATCCAATTTTATAATTGGAAAATCGGCTCGAATGGAAGATCACATCAGCTGAAA
                      ____________________________________________________________
consensus             AATCTGATCCAATTTTATAATTGGAAAATCGGCTCGAATGGAAGATCACATCAGCTGAAA
 
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JMSF051A15+           CAGGCAGGACTGCGTCCTTTCTCACAGTGACAAAATCTCGGCTCACCCTCGTCATAATCC
JMFF051B18+           CAGGCAGGACTGCGTCCTTTCTCACAGTGAAAAAATCTCGGCTCACCCTCGTCATAATCC
JMSF036O11+           CAGGCAGGACTGCGTCCTTTCTCACAGTGACAAAATCTCGGCTCACCCTCGTCATAATCC
                      ____________________________________________________________
consensus             CAGGCAGGACTGCGTCCTTTCTCACAGTGACAAAATCTCGGCTCACCCTCGTCATAATCC
 
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JMSF051A15+           AAACTATTAGAGACAATAATAATGCTATGAAAAGTCGGAAGCAAAG              
JMFF051B18+           AAA-----AGAGACAATAATAATGCTATGAAAAGTCGGAAGCAAAGCTGGAGCTGAGGAC
JMSF036O11+           AAA-----AGAGACAATAATAATGCTATGAAAAGTCGGAAGCAAAGCTGGAGCTGAGGAC
                      ____________________________________________________________
consensus             AAA-----AGAGACAATAATAATGCTATGAAAAGTCGGAAGCAAAGCTGGAGCTGAGGAC
 
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JMFF051B18+           TTGTGGGGATCC                                                
JMSF036O11+           TTGTGGGGATCCTTTTTTGTGAGTGACAAAAGTGGTGAAATTTAATTTTGGTGGGATCAG
                      ____________________________________________________________
consensus             TTGTGGGGATCCTTTTTTGTGAGTGACAAAAGTGGTGAAATTTAATTTTGGTGGGATCAG
 
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JMSF036O11+           TTTGCAGCAGTCTGTGTGTTGAGTGGTGCTCCTGACTTTCAGAGAGAGAAAAAAACAGTC
                      ____________________________________________________________
consensus             TTTGCAGCAGTCTGTGTGTTGAGTGGTGCTCCTGACTTTCAGAGAGAGAAAAAAACAGTC